Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01268 ATGTTCGTGTTCTTGGAATTTGGGGGTATGCCTGGTATTGGAAAAACAACTATTGCTGAAGAAGTATTTCGTAGGCTACGCTCTGAATACGAAAGTTGTTGTTTTATGGCTAATGTAAGAGAAGAATCAGAAAGATATGGTACAAACAGTTTGAAGTTAAGAAAAAAGCTTTTATCCACTTTACTAGAGGAAGAAGATTTGAAAGATGACATGATAAATGGATTACCTTCTTTGGTTAAGAAAAGGCTTGGCCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAGAGATGCAGAGCAACTAGAAGTTTTGGTTGGAACAGCTGATTGGTTAGGTGCAGGAAGTAGAATCATCATAACTACTAGAGATAAGCAAGTACTTGCTGGAAAAGTTGATGATGTCTATGAGGTTGAGCCGTTGGACTCCGTTGAATCTTTTCAGCTTTTCAATTTGCATGCTTTTAATAAACAAAAGCATCTTGAAATAGAGTACTATAAGCTATCAATGAAGATGGTGGATTATACCAAAGGTGTTCCATTAGTTCTTAAAGCTTTAGCTAACCTTCTTTGTGAGAAAGATAAAGCCATATGGGAAAGCCAAGCAAGGAATCTGAAAATAGAGCAGATTGAAAATGTCCATGATGTTTTTAGATTGATATACACTAATCTTGATTATTATGAAAAGATTATATTCCTGGATATTGCCTGCTTTTTTGATGGAATGAAGTTGAAACTTGACCTCATACAACTTCTATTGAAAGATCGTCGTTATTCGGTGAGCACTAAACTAGACAGACTTAAAGATAAAGCTCTTGTAACAATTTCTCAACAAAGTATTGTGTCAATGCATGACATTATACAAGAAACAGCTTGGGAGATTGTTCGACAAGAATCTGTTGAAGAACCAGGAAGCCGAAGCCGGCTGTTGGATCCTGATGACATTTATCATGTATTGAAAGATAACAAGGGAAGTGAGGCCCTCAGAAGTATGGCCATCAGACTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCGAGTATTTGCCAAGATGAGCAAATTGAAATTTTTGGATATTTACACTAAGGGCTCTCAAAATGAAGGGAGTTTGTCGCTTCCGGGAGGGCTTGAATCCTTACCTAATGAACTGAGATATCTTCGTTGGGAGTACTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTGCAGAAAACCTTGTTACATTGAACTTGCCTTATAGCCAATTGAAGAAACTTTGGCATGGAGTGAAGCATTCAGATTCAGTTAGCTCACTGGTTTTTTCTTGGTTGGTTCTAAATGGAACAGGATCTTGGAATTTGAATGTCCTTATACTCCACTCATCCACACTCCTAACAGAGCTACCAGATTTTTCAAAGGCCACAAGTCTTGCAGTACTGGACCTCCATTTCTGCATAGGGTTGACTAGTGTTCATCCATCTGTTTTCTCTCTAAAAAAGCTTAAGAAACTGGATGTGAGTGGATGTACTTCCCTTACAAGTCTTCAAAGCAATAATACCCATGTAAGTTCACTTAGTTATCTTTCCCTCTACAACTGCACAGCACTGAAGGAATTTTCAGTGACCTCAGAGAATATGAAAGAATTGAATTTAGAGCTCACGGATATCAAAGAACTACCCTCGTCAATTGGACTTCAAACCAAACTTGAAAAGTTACATCTTGGGCACACTCGTATCGAGATCTTGCCTAAGAGCATCAACAATCTTACAAGACTGAGACATCTAGACTTGCATGAATGCAGGGAGCTTCAAACTCTACCAGAGCTTCCTCCGTCGCTTGAAACACTAGACGCCGATGGGTGTGTATCACTAGAGAATGTAGTGTTCCACTCAACTGCTAGTGAGCAACTTAAGGAAAAGAAGAAAAAGGTTACCTTCTGGAATTGCCTTAAATTAAACGAGCCTTCTCTCAAGGCTATTGAGTTGAATGCTCAAATCAACATGATGAACTTTTCACACCATTGTATATCCACACGTGATCTTGATCGTGATCACGATCACGATCGCAATCAAGGCATTTACGTGTACCCAGGTAGCACAATTCCAGAGTGGTTGGAATATAGTACAAGTACAAGTACACACGATTACCTAACTATTGATCTTTCCTCTGCTCCTTATTTCTCTAACTTGGGCATCATTTTTGGATTCATCATTCCAGCGACATCATCAGAGGGTTCGATTCTGAAATTCAAAATCAGTGATGGCGAAGATGAAGGTATCAAAGTGTACTTGGACAGACCACGTGATGGAATTGAATCGGATCATGTGTATCTAATGTATGACCCAAGATGTTCTCATTACCTAGCTAGCCGAGTGAATGATCAGTCAAAGATTAAAATTCAGGTTAGAGCAGCATCAAGAACACCGACAACACAGTACGTGCCAGTTAGGTTAAAAGGCTTTGGGGTTAGCCTAGTAACCCCTTCACAATATGACAAGTTTAAACAGCAACTAGAATTTGGTGATAGTAGTGTTGTTCCAAATAGTATGTGTTCCATGGAAGAGGGATCAAAGTTTCTTGGAATTGAAAATGCTAAACAGTTAAGTTATTTCAATTGCATGATTTAG 2601 0.3883 MFVFLEFGGMPGIGKTTIAEEVFRRLRSEYESCCFMANVREESERYGTNSLKLRKKLLSTLLEEEDLKDDMINGLPSLVKKRLGRMKVLIVLDDVRDAEQLEVLVGTADWLGAGSRIIITTRDKQVLAGKVDDVYEVEPLDSVESFQLFNLHAFNKQKHLEIEYYKLSMKMVDYTKGVPLVLKALANLLCEKDKAIWESQARNLKIEQIENVHDVFRLIYTNLDYYEKIIFLDIACFFDGMKLKLDLIQLLLKDRRYSVSTKLDRLKDKALVTISQQSIVSMHDIIQETAWEIVRQESVEEPGSRSRLLDPDDIYHVLKDNKGSEALRSMAIRLSEIKELQLSPRVFAKMSKLKFLDIYTKGSQNEGSLSLPGGLESLPNELRYLRWEYYPLESLPSKFSAENLVTLNLPYSQLKKLWHGVKHSDSVSSLVFSWLVLNGTGSWNLNVLILHSSTLLTELPDFSKATSLAVLDLHFCIGLTSVHPSVFSLKKLKKLDVSGCTSLTSLQSNNTHVSSLSYLSLYNCTALKEFSVTSENMKELNLELTDIKELPSSIGLQTKLEKLHLGHTRIEILPKSINNLTRLRHLDLHECRELQTLPELPPSLETLDADGCVSLENVVFHSTASEQLKEKKKKVTFWNCLKLNEPSLKAIELNAQINMMNFSHHCISTRDLDRDHDHDRNQGIYVYPGSTIPEWLEYSTSTSTHDYLTIDLSSAPYFSNLGIIFGFIIPATSSEGSILKFKISDGEDEGIKVYLDRPRDGIESDHVYLMYDPRCSHYLASRVNDQSKIKIQVRAASRTPTTQYVPVRLKGFGVSLVTPSQYDKFKQQLEFGDSSVVPNSMCSMEEGSKFLGIENAKQLSYFNCMI 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01268 866 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 616 IPR044974 GO:0006952
Vifa4g01268 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 234 IPR027417 -
Vifa4g01268 866 Pfam NB-ARC domain 4 212 IPR002182 GO:0043531
Vifa4g01268 866 Gene3D - 7 135 IPR027417 -
Vifa4g01268 866 Pfam Leucine Rich Repeat 403 422 IPR011713 -
Vifa4g01268 866 Gene3D - 140 224 IPR042197 -
Vifa4g01268 866 PRINTS Disease resistance protein signature 4 19 - -
Vifa4g01268 866 PRINTS Disease resistance protein signature 175 189 - -
Vifa4g01268 866 PRINTS Disease resistance protein signature 487 503 - -
Vifa4g01268 866 PRINTS Disease resistance protein signature 82 96 - -
Vifa4g01268 866 SUPERFAMILY L domain-like 332 661 - -
Vifa4g01268 866 SUPERFAMILY "Winged helix" DNA-binding domain 212 319 IPR036390 -
Vifa4g01268 866 Gene3D Ribonuclease Inhibitor 536 661 IPR032675 -
Vifa4g01268 866 Gene3D Ribonuclease Inhibitor 311 535 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01268 Vifa-Chr4 382631866 382634661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01268 9 599 WRKY Transcription Factor Family AT4G12020 38.215 4.55e-100 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01268 - - mtr:11419915 1362.44