Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01263 ATGACCTCTTCTCTCCATCTCATCGCGACGTCACCAACTTCTATGAACTATTGTCCGCCAGCCTCGCCGTTCAACAACTTCCGGCAACCGCTATCAATCATCACCACAATTGTGACTTTGTTCCCCTGTTCCTCCGCCACCTTCCATCATCATCACCTTCACCCTCTCGTCTTGCTCAGCATAGTCGATAACTACAACAGAGTCGCCAAAGACACTCGTAAACGCGTCGTCGACGTCTTGCTCGGTTCCTCTTTCAAAGGCACTGTTGATATCACCAACAGCTACGTCGTGCCTTTTGAAGAAGATGAAAAGGATCCTAGCATTTGGTTTCTCGATCATAATTATCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGCTAAGGAGCATGTTGTAGGGTGGTATAGTACTGGACCGAAGTTGAAAGAAAATGACCTTGACATTCATGGTTTATTCAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTCGAACCTAAGGAGCTGGGAATTCCTAATAAAGCTTACTATGTTGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAGGAGATAGGAGTTGAGCACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGGACGTATTCAACCTGCTGCCAAATCTTAATGTCACTGATTGTATTCAACCACACGCATGA 756 0.4325 MTSSLHLIATSPTSMNYCPPASPFNNFRQPLSIITTIVTLFPCSSATFHHHHLHPLVLLSIVDNYNRVAKDTRKRVVDVLLGSSFKGTVDITNSYVVPFEEDEKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPNKAYYVVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEDVFNLLPNLNVTDCIQPHA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01263 251 Gene3D Cytidine Deaminase, domain 2 45 228 - -
Vifa4g01263 251 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 48 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa4g01263 251 ProSiteProfiles MPN domain profile. 51 188 IPR037518 -
Vifa4g01263 251 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 50 231 - -
Vifa4g01263 251 SMART pad1_6 50 184 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa4g01263 251 FunFam 26S proteasome non-ATPase regulatory subunit 7 43 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01263 Vifa-Chr4 381600530 381601474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01263 52 217 Eukaryotic Initiation Factors Gene Family AT2G39990 31.765 8.43e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01263 K03038 - gmx:100790393 357.066