Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01260 ATGGGTAGAATTCCTAAGGAGATTAATAAAGGTGCTTGGTCTCGTGAAGAAGATGATATTCTTTCTAAATATGTTGCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCACAAAATGCCGGTTTAAAGCGATGTGGAAAAAGTTGTAGACAAAGATGGTTGAATTATCTAAAACCAGGTATAAAGAGAGGCGACATCTCTGCAGATGAAGAGGATATGATCGTAAGGCTTCATCGTCTTCTTGGTAACAGATGGTCTTTGATTGCTAAGAGATTACCCGGACGAACCGACAATGAAATCAAGAATTATTGGAATACGAATCTATCAAAGAAGTTACAAAAACAACCTACATCATCATCATTATCTGTCTCACTTCAAAACAATCATAACAAATATGGACATGTAGCACCAGAAGCTCCAAGGCCAAGGAGATTGAAGATTGTTCATCATCACAACAAATTTTTGGAGAATAGCAATGGAAGTGAGTGTGATCAAGAAAGTGATGAAACCTCAATCCCCGATTTCCTCATCGACAATGATCATCAAGACAATTTGTTGGCTTGTGATGATGAGTCCAAAACCAACTCAGAGATTCCACAAATAGAAGAAGATCACAAGAAGGTAGTTTCAACCAATAGTACTCATAACTCATCATCACCTTCTGATCATTTTCATCTTTTATCAGAGAAATTTGATCCTCTAGATACCCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 765 0.3752 MGRIPKEINKGAWSREEDDILSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISADEEDMIVRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSSSLSVSLQNNHNKYGHVAPEAPRPRRLKIVHHHNKFLENSNGSECDQESDETSIPDFLIDNDHQDNLLACDDESKTNSEIPQIEEDHKKVVSTNSTHNSSSPSDHFHLLSEKFDPLDTLLDVELKKMASFLGLEND 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01260 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Vifa4g01260 254 FunFam Transcription factor TT2 66 135 - -
Vifa4g01260 254 CDD SANT 12 57 IPR001005 -
Vifa4g01260 254 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 202 - -
Vifa4g01260 254 Gene3D - 4 63 - -
Vifa4g01260 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Vifa4g01260 254 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vifa4g01260 254 CDD SANT 67 108 IPR001005 -
Vifa4g01260 254 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vifa4g01260 254 Gene3D - 66 136 - -
Vifa4g01260 254 SMART sant 9 59 IPR001005 -
Vifa4g01260 254 SMART sant 62 110 IPR001005 -
Vifa4g01260 254 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vifa4g01260 254 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Vifa4g01260 254 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vifa4g01260 254 FunFam MYB-related transcription factor 9 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01260 Vifa-Chr4 380588709 380589814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01260 7 112 MYB Transcription Factor Family AT5G40330 66.038 4.28e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g01260 Myb_DNA-binding 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01260 K09422 - gmx:547568 322.013