Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01257 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCTCACTTGAGGATTGGTGAAGAATTTGCTACAGAAAACCAAAACCATAACCATAATCAAAACCATGGAGAAGGTTCAGAAACTGGAAGAAACTATGTTCCTTCTTCTTCTCCTCATCCTCCTCCTCATCATCATCATCATCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCGCAAGAATGGAGATATGAGAATGCAATAACAGGTGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTGGGCTGTTACTCAAACCAAAACCAGAATAATACTAATATTTCCAAAATCAATGTTAATGTTTCACCAAGTTTTTGCACCAACAATAACACAGAGATTGAAACAGTAGAGAATCATCATAATCACAACCATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATCCATATAACGATAACAACAACAATCATCATGCTTTAATCAATAATAGTACTATGTACAAGTCTTGGATGACTCAAACTCAGTTTTCTGAAGGGAAAAGTTCCAATGATGGAAATGGTTGCAGCTTTCAATCTCTTAATTTGACTATGAGTCCAAGTGTTCCAAATGGTGTTAGTGTTGGTGGTGTTGGTGCAATTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAGTTCTGCTAGAGAACCTATCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAAGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGAAGGGTTGCGGGAAACAAAGACTTGTATCTTGGTACATTTAGCACACAAGAGGAGGCTGCAGAAGCTTATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCGAGCTCAACTCTAATAGCCGGAGATCTCGCGAAACGGTCACCTAAAGAATCCGCGCCTCCTGCTGTAGCCACTGCCGAGGACTTCAATTCGTGCGGCAGTGCGTCGACACCTTCTCAGCCGTCTTCTCTAGCTATTACTGACCGTGAACAACAACATTCTGATGAATTGTCCAACATGGTGTGGAATTCGAACAAGGACGAGCAACCGCAACCACCGCAGAACGAGTGTAGAAACAACACCGATGTCGCTGAATCGTCACAGCACGGTTCGCCGAGCAACAAGAATGAGATGAACCCTGAAAGTCTTAAATTACCTAATGAGTTTGGAGGGAGTGGAGCAGATTACGGACATGGTTACTTCACACTCCAAGGACCAAAGTTTGATGACGGAAACAATGAAAATGACCACATGAACAACAATAGACTTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAGTGA 1764 0.4059 MSNWLGFSLTPHLRIGEEFATENQNHNHNQNHGEGSETGRNYVPSSSPHPPPHHHHHLSVMPLRSDGSLCVSDSFTPQEWRYENAITGGNSNEEGPKLEDFLGCYSNQNQNNTNISKINVNVSPSFCTNNNTEIETVENHHNHNHLTNQSLIHSFHHPYNDNNNNHHALINNSTMYKSWMTQTQFSEGKSSNDGNGCSFQSLNLTMSPSVPNGVSVGGVGAISNVQMNEDPRKRSLSKSSSAREPIPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPAVATAEDFNSCGSASTPSQPSSLAITDREQQHSDELSNMVWNSNKDEQPQPPQNECRNNTDVAESSQHGSPSNKNEMNPESLKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01257 587 MobiDBLite consensus disorder prediction 483 528 - -
Vifa4g01257 587 SUPERFAMILY DNA-binding domain 259 325 IPR016177 GO:0003677
Vifa4g01257 587 SMART rav1_2 260 329 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 SMART rav1_2 359 423 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 MobiDBLite consensus disorder prediction 240 258 - -
Vifa4g01257 587 MobiDBLite consensus disorder prediction 223 258 - -
Vifa4g01257 587 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 PRINTS Ethylene responsive element binding protein signature 399 419 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 MobiDBLite consensus disorder prediction 456 475 - -
Vifa4g01257 587 MobiDBLite consensus disorder prediction 24 44 - -
Vifa4g01257 587 Gene3D AP2/ERF domain 359 419 IPR036955 GO:0003700|GO:0006355
Vifa4g01257 587 Gene3D AP2/ERF domain 259 325 IPR036955 GO:0003700|GO:0006355
Vifa4g01257 587 SUPERFAMILY DNA-binding domain 358 419 IPR016177 GO:0003677
Vifa4g01257 587 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 506 - -
Vifa4g01257 587 Pfam AP2 domain 260 315 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 Pfam AP2 domain 358 409 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 ProSiteProfiles AP2/ERF domain profile. 359 417 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 MobiDBLite consensus disorder prediction 439 538 - -
Vifa4g01257 587 FunFam AP2-like ethylene-responsive transcription factor 358 419 - -
Vifa4g01257 587 ProSiteProfiles AP2/ERF domain profile. 260 323 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 FunFam AP2-like ethylene-responsive transcription factor ANT 259 325 - -
Vifa4g01257 587 CDD AP2 358 419 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 CDD AP2 259 325 IPR001471 GO:0003700|GO:0006355
Vifa4g01257 587 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01257 Vifa-Chr4 379912630 379915461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01257 1 446 AP2-EREBP Transcription Factor Family AT1G72570 49.370 6.33e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa4g01257 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01257 K09285 - gmx:100809762 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01257 4 379912630 379915461 Vifa4g01257 4 379912630 379915461 ECH