Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01256 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCTCACTTGAGGATTGGTGAAGAATTTGCTACAGAAAACCAAAACCATAACCATAATCAAAACCATGGAGAAGGTTCAGAAACTGGAAGAAACTATGTTCCTTCTTCTTCTCCTCATCCTCCTCCTCATCATCATCATCATCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCGCAAGAATGGAGATATGAGAATGCAATAACAGGTGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTGGGCTGTTACTCAAACCAAAACCAGAATAATACTAATATTTCCAAAATCAATGTTAATGTTTCACCAAGTTTTTGCACCAACAATAACACAGAGATTGAAACAGTAGAGAATCATCATAATCACAACCATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATCCATATAACGATAACAACAACAATCATCATGCTTTAATCAATAATAGTACTATGTACAAGTCTTGGATGACTCAAACTCAGTTTTCTGAAGGGAAAAGTTCCAATGATGGAAATGGTTGCAGCTTTCAATCTCTTAATTTGACTATGAGTCCAAGTGTTCCAAATGGTGTTAGTGTTGGTGGTGTTGGTGCAATTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAGTTCTGCTAGAGAACCTATCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAAGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGAAGGGTTGCGGGAAACAAAGACTTGTATCTTGGCACACAAGAGGAGGCTGCAGAAGCTTATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCGAGCTCAACTCTAATAGCCGGAGATCTCGCGAAACGGTCACCTAAAGAATCCGCGCCTCCTGCTGTAGCCACTGCCGAGGACTTCAATTCGTGCGGCAGTGCGTCGACACCTTCTCAGCCGTCTTCTCTAGCTATTACTGACCGTGAACAACAACATTCTGATGAATTGTCCAACATGGTGTGGAATTCGAACAAGGACGAGCAACCGCAACCACCGCAGAACGAGTGTAGAAACAACACCGATGTCGCTGAATCGTCACAGCACGGTTCGCCGAGCAACAAGAATGAGATGAACCCTGAAAGTCTTAAATTACCTAATGAGTTTGGAGGGAGTGGAGCAGATTACGGACATGGTTACTTCACACTCCAAGGACCAAAGTTTGATGACGGAAACAATGAAAATGACCACATGAACAACAATAGACTTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAGTGA 1755 0.4068 MSNWLGFSLTPHLRIGEEFATENQNHNHNQNHGEGSETGRNYVPSSSPHPPPHHHHHLSVMPLRSDGSLCVSDSFTPQEWRYENAITGGNSNEEGPKLEDFLGCYSNQNQNNTNISKINVNVSPSFCTNNNTEIETVENHHNHNHLTNQSLIHSFHHPYNDNNNNHHALINNSTMYKSWMTQTQFSEGKSSNDGNGCSFQSLNLTMSPSVPNGVSVGGVGAISNVQMNEDPRKRSLSKSSSAREPIPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPAVATAEDFNSCGSASTPSQPSSLAITDREQQHSDELSNMVWNSNKDEQPQPPQNECRNNTDVAESSQHGSPSNKNEMNPESLKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01256 584 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 503 - -
Vifa4g01256 584 SUPERFAMILY DNA-binding domain 259 325 IPR016177 GO:0003677
Vifa4g01256 584 MobiDBLite consensus disorder prediction 240 258 - -
Vifa4g01256 584 ProSiteProfiles AP2/ERF domain profile. 359 414 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 Pfam AP2 domain 260 315 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 Pfam AP2 domain 358 406 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 Gene3D AP2/ERF domain 259 325 IPR036955 GO:0003700|GO:0006355
Vifa4g01256 584 Gene3D AP2/ERF domain 359 416 IPR036955 GO:0003700|GO:0006355
Vifa4g01256 584 SMART rav1_2 359 420 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 SMART rav1_2 260 329 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 MobiDBLite consensus disorder prediction 223 258 - -
Vifa4g01256 584 FunFam AP2-like ethylene-responsive transcription factor ANT 259 325 - -
Vifa4g01256 584 SUPERFAMILY DNA-binding domain 358 416 IPR016177 GO:0003677
Vifa4g01256 584 MobiDBLite consensus disorder prediction 24 44 - -
Vifa4g01256 584 CDD AP2 358 416 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 MobiDBLite consensus disorder prediction 453 472 - -
Vifa4g01256 584 ProSiteProfiles AP2/ERF domain profile. 260 323 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 PRINTS Ethylene responsive element binding protein signature 396 416 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 CDD AP2 259 325 IPR001471 GO:0003700|GO:0006355
Vifa4g01256 584 MobiDBLite consensus disorder prediction 480 525 - -
Vifa4g01256 584 MobiDBLite consensus disorder prediction 436 535 - -
Vifa4g01256 584 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01256 Vifa-Chr4 379912630 379915461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01256 1 443 AP2-EREBP Transcription Factor Family AT1G72570 48.739 1.92e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa4g01256 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01256 K09285 - gmx:100809762 766.533