Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01254 ATGATGAGTAGTGCAAGTTCAAGAAATAGGTCACCTTTTACACCAAATCAATGGCAAGAGCTTGAACAACAAGCTCTTGTTTTCAAATACATGGTTACAGGAACACCTATTCCACCAGATCTTATCTTCTCTATCAAAAGAAGCTTGGACAGTTCTATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTTGTGTCTTCATCATCATCATCAACAACAAACACAATCTCTCTATCTCAATCTCAATCTCAATCAAATACCAGAAACCTCTCCTTGAACACCAACACCACCTTAACCTCACCTTCTTCTTTTCCTTTTCATGAATCTCAACATCAACAACAACACTTTTCACAACCCTACCAAAACCCTTACTTTAATTATTCTCAGCAATCTATTACTGCTTCTAAACCTCTTGATCATTCTGAGTTTCAACCTCATCATCATGATGGTTCTACTACTCATCACCTCTTTTTGGATTCTGGATCTTATTCTCAGGAAGAAAAAGACTACAGGAGGCATGTGCAAGTGCAAGGGATAAGAGATGGAACTATGGATGAAAGAACTTTCTTTCCAGAAGCTTCAGGCTCTTCTAGGAGTTATCATGATTCATATCAACAACAACTGAATTCCTTTAAGTCATCATCATATGCTAGCTCACAATTTCACAACATCAATGATGATAATTCAAGACAACAACAGCAGCAGCAGCAACAACAACAACAACAAGAACAACACTGTTTTGTTTTAGGCACAGACTTCAAATCAACAAGACCAACAACAAACAAGGACAAAGAAAGTGAGATAACTCAGAAACCACTTCATCATTTCTTTGGTGAGTGGACACCAAAGAACACAGATTCTTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACAGATGAATGA 1080 0.3898 MMSSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSSSSTTNTISLSQSQSQSNTRNLSLNTNTTLTSPSSFPFHESQHQQQHFSQPYQNPYFNYSQQSITASKPLDHSEFQPHHHDGSTTHHLFLDSGSYSQEEKDYRRHVQVQGIRDGTMDERTFFPEASGSSRSYHDSYQQQLNSFKSSSYASSQFHNINDDNSRQQQQQQQQQQQQEQHCFVLGTDFKSTRPTTNKDKESEITQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01254 359 MobiDBLite consensus disorder prediction 235 301 - -
Vifa4g01254 359 MobiDBLite consensus disorder prediction 107 181 - -
Vifa4g01254 359 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vifa4g01254 359 MobiDBLite consensus disorder prediction 119 181 - -
Vifa4g01254 359 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g01254 359 PANTHER GROWTH-REGULATING FACTOR 5 11 347 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa4g01254 359 MobiDBLite consensus disorder prediction 309 328 - -
Vifa4g01254 359 MobiDBLite consensus disorder prediction 339 359 - -
Vifa4g01254 359 SMART QLQ_2 11 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g01254 359 MobiDBLite consensus disorder prediction 248 301 - -
Vifa4g01254 359 Pfam WRC 78 120 IPR014977 -
Vifa4g01254 359 ProSiteProfiles QLQ domain profile. 12 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g01254 359 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01254 Vifa-Chr4 377785184 377786559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01254 3 120 GRF Transcription Factor Family AT3G13960 72.034 1.09e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa4g01254 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01254 - - aprc:113851425 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01254 4 377785184 377786559 Vifa4g01254 4 377785184 377786559 ECH