Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01242 ATGATTATGGAACCTAACCCGACATCGGATCACATTCTTGACTGGCTTGAAGGTTCGGTTTCGTTCTTTCCGTCATTCTTGGATGATCCCTATAACAGCGGTTACATCCAAGAGTATCCGTTATGGGATCAGAATCAAGATATAAGGAGCCAGTATCAAACTGATGTGATTATTGATTCTCCTAATGCCACAAACAGTGCGACCAACATTGTTGCTGCTAGTACTACCACGAGCGTGACATCCCTTGAGCCGATTAGTTCGAACAACGTACCATTTTCTGATTTACCGAAGAAACGAAATGTTGATGATGAGTCGAGGCTCGAGAAACAATCACAAAACCAGAAGAACAAGAGAGTCAAGAGGCGTGTGATGAATGAAGGTGATAATGGAGATGCAGGTCTTGAAGGGACAGTGGTTAGAAAATCTGTTGGGAATAAGAAAGGTGCTGGTAAGGCTAATGGAAGTAACTGCAACAATGGAAACAATAAGGATGGTAGATGGGCTGAGCAGTTGTTGAACCCTTGTGCTGCAGCGATAACCGGGGGAAACCTGAATCGCGTGCAACACCTTTTATATGTTCTCCATGAGCTAGCCTCAACTACCGGTGATGCCAACCATCGGCTTGCAGCGCATGGTCTCCGAGCATTGACACACCATCTGTCTTCGTCTTCGTCGTCTACCTCCCCAGGGACTATAACTTTTGCATCTACAGAACCGCGATTCTTCCAAAAGTCATTATTGAAGTTCTATGAGGTTAGTCCTTGGTTTTCCTTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTAGCTGAAGAGCCGAATGATTCGCGCACCCTTCACATCCTTGACATTGGAGTCTCTCATGGTGTGCAATGGCCAACTTTTCTAGAGGCCTTGAGTCGTCGACCCGGTGGACCTCCTCTGGTTCGCCTCACCGTGGTTACTGCTTCATCGACTGAAAATGACCAAAACATGGAGACACCATTTTCAATAGGTCCATGTGGTGACAACTTCTCTTCAAGACTTCTAGGTTATGCTCAGTCCATAAATGTCAACCTGCAGATAAACAAGCTAGATAACATTCCATTGCAGACATTAAATGCGAAAAGTGTTGACACCACCCCCGACGAAACCTTAATCGTCTGCGCTCAATTCAGGTTGCACCACTTGAATCATAACAATCCTGATGAAAGAAGTGAGTTTCTGAAGGTATTGAGAGACATGGAGCCTAAAGGGGTGATATTAAGTGAGAACAACATGGAGTGTTGCTGTAGTAGCTGTGGCGATTTTGCTACTAGATTCTCTCGAAGAGTGGACTACTTATGGAAGTTTTTAGATTCAACCAGTTCAGCATTCAAAAGTCGCGAGAGTGATGAAAGGAGAATGATGGAAGGCGAAGCTTCAAAAGCATTGACAAACCAGCGTGAGATGAACGAAAAGAGAGAAAAATGGTGTGAAAGAATGAAAGAGGCAGGGTTTGCAGAGGAAATGTTCGGAGAAGATGCAATTGACGGAGGTCGAGCTTTGTTGAGAAAGTATGATAGTAATTGGGAGATGAAACTAGAAGAAGAGAACAATACAAGTGTGGGACTATGGTGGAAGGGGCAACCTATTTCTTTCTGTTCTCTGTGGAAATTGGATAAACAACATTGA 1659 0.44 MIMEPNPTSDHILDWLEGSVSFFPSFLDDPYNSGYIQEYPLWDQNQDIRSQYQTDVIIDSPNATNSATNIVAASTTTSVTSLEPISSNNVPFSDLPKKRNVDDESRLEKQSQNQKNKRVKRRVMNEGDNGDAGLEGTVVRKSVGNKKGAGKANGSNCNNGNNKDGRWAEQLLNPCAAAITGGNLNRVQHLLYVLHELASTTGDANHRLAAHGLRALTHHLSSSSSSTSPGTITFASTEPRFFQKSLLKFYEVSPWFSFPNNIANASILQVLAEEPNDSRTLHILDIGVSHGVQWPTFLEALSRRPGGPPLVRLTVVTASSTENDQNMETPFSIGPCGDNFSSRLLGYAQSINVNLQINKLDNIPLQTLNAKSVDTTPDETLIVCAQFRLHHLNHNNPDERSEFLKVLRDMEPKGVILSENNMECCCSSCGDFATRFSRRVDYLWKFLDSTSSAFKSRESDERRMMEGEASKALTNQREMNEKREKWCERMKEAGFAEEMFGEDAIDGGRALLRKYDSNWEMKLEEENNTSVGLWWKGQPISFCSLWKLDKQH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01242 552 MobiDBLite consensus disorder prediction 77 138 - -
Vifa4g01242 552 MobiDBLite consensus disorder prediction 96 128 - -
Vifa4g01242 552 Pfam GRAS domain family 169 547 IPR005202 -
Vifa4g01242 552 ProSiteProfiles GRAS family profile. 159 547 IPR005202 -
Vifa4g01242 552 MobiDBLite consensus disorder prediction 77 94 - -
Vifa4g01242 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 132 535 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01242 Vifa-Chr4 374092806 374094464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01242 1 547 GRAS Transcription Factor Family AT3G13840 50.626 7.20e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa4g01242 GRAS 1.8e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01242 - - mtr:11434050 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01242 4 374092806 374094464 Vifa4g01242 4 374092806 374094464 ECH
Vifa4g01242 4 374092806 374094464 Vifa1g00852 1 144859583 144860917 PCT