Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01235 ATGCCTTCAAAGAAAAAAAGTCAATGGAAAACCTTAGTACTTGGTTGTTTCAAAGACAAAAACCTTACCTTGGAATCACCAAAACTTGTTTCAAAAAAACAAGGTTCAAGTAGAATCTCTCTTTCTGATTTAAGTGATTATTCATCTCCTTCTGTCATTAGTGATTTATCCAATTCATTAGTTGGAAATGTTCAAATTTTCACTTGCAAAGAACTCAAAGAGATCACAAACAACTTCAACAAATCAAATTTTCTTGGTGAAGGTGGATTTGGAAAGGTTTACAAAGGTTTCATTGATGATAAACTTAGACCTGCACTTGTTCCTCCTCAAGCTGTTGCTGTTAAAGCCTTGAACTTGGATGGAAAACAAGGTCATAGAGAGTGGTTGGCTGAAGTTCTATTTTTGGGGCAGTTGAAGCATCGCAATCTTGTTAACTTAATTGGTTATTGCTATGAAGATGAGCATAGACTTCTTGTCTATGAATATATGGAAAGAGGAAGTTTAGAAGAAAAACTTTTCAAAGGTTATTTAGCAACTTTGCCTTGGTTAACAAGAATTAAAATAGCACTTGGTGCTGCTAAAGGACTAGCTTTTCTTCATGAAGAAGAGAAACCTGTTATATATAGAGATGTTAAAGCCTCAAACATTCTATTAGATGTTGATTTCATTGCTAAGTTGTCTGATTTCGGTTTAGCAATCGATGGACCAAATAAAGATCAAACTCATATCACGACTCGCGTGATGGGTACACATGGTTATGCCGCTCCCGAATACATCAATACAGGTCGTTTGACGACGATGAGTGATGTGTATAGCTTTGGAGTAGTTCTCTTAGAGCTACTAACAGGAAAAAAATCAGTGGACAAAAAAAGACCATCAAGAGAACAAGATTTAGTAGAGTGGGCAAGACCATTATTGAAGGATTCACACAAACTCGAAAGAATAATCGATTCAAGACTCGAGGATCAATACTCAATCGAAGGAGCAAGAAAACTAGCATCCTTAACATATCAATGTCTAAGTCATCATGACAAAAGTAGACCAACAATGAGAACCGTTGTTAAAACGTTAGAGTCTCTCATGAAATTAAATGACATTCCAATTGGTCATTTTGTTTATGTGGCTCCAAGTGAGGTGACAAATTGTGATGTGTCACTAAATGTGTGTGACAAAAGTGTTGTGAAGAGTAAGGATGAAGAAAAGGAAGAGGGTCGGAGAACTCGTCGAAAAAGTCGTAGTAGTCGACGAAAGATTCAGGCATTGATGAGGTCTCGTTCTGTTTACTCTGACACTGCTTTGTATAAGACTCTTGGAACTGGTTTGTATTCACCTAAGGAGAGCAAAGAGAAGCAATAA 1356 0.3665 MPSKKKSQWKTLVLGCFKDKNLTLESPKLVSKKQGSSRISLSDLSDYSSPSVISDLSNSLVGNVQIFTCKELKEITNNFNKSNFLGEGGFGKVYKGFIDDKLRPALVPPQAVAVKALNLDGKQGHREWLAEVLFLGQLKHRNLVNLIGYCYEDEHRLLVYEYMERGSLEEKLFKGYLATLPWLTRIKIALGAAKGLAFLHEEEKPVIYRDVKASNILLDVDFIAKLSDFGLAIDGPNKDQTHITTRVMGTHGYAAPEYINTGRLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSHKLERIIDSRLEDQYSIEGARKLASLTYQCLSHHDKSRPTMRTVVKTLESLMKLNDIPIGHFVYVAPSEVTNCDVSLNVCDKSVVKSKDEEKEEGRRTRRKSRSSRRKIQALMRSRSVYSDTALYKTLGTGLYSPKESKEKQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01235 451 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
Vifa4g01235 451 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 163 366 - -
Vifa4g01235 451 Gene3D Phosphorylase Kinase; domain 1 52 162 - -
Vifa4g01235 451 ProSiteProfiles Protein kinase domain profile. 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01235 451 SMART serkin_6 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01235 451 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Vifa4g01235 451 MobiDBLite consensus disorder prediction 397 421 - -
Vifa4g01235 451 CDD STKc_IRAK 85 360 - -
Vifa4g01235 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vifa4g01235 451 PANTHER OS01G0588500 PROTEIN-RELATED 42 360 - -
Vifa4g01235 451 FunFam Serine/threonine-protein kinase BIK1 48 162 - -
Vifa4g01235 451 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Vifa4g01235 451 ProSitePatterns Protein kinases ATP-binding region signature. 85 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01235 Vifa-Chr4 372516705 372518665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01235 64 413 Glycoside Hydrolase AT3G07070 45.763 8.71e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g01235 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01235 - - gmx:100790454 635.18