Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01223 ATGAAGGCGCTGAATGGGTTATTGGGTTTAAGACGCAGGAAAATTCATGGGGTTTTCAATGGGTTGTGTGCTATGGTTGTTTTGTTCTTTTTTTACAATAGGGAAGATATAATTCGTAATCCGATTCTTAGACATTCTGCGTATTTGGTTAATCATCATGGTTTGCCTCAAAATTCAATTTTGAAGGATGGGGTTTCGGTTTCTGTGATTCGCCGTAGAATGGATGAGATTAGTGCTAACACTTCAAGTGTAGCTGCTGATAATGATTTGGGTGTGATTAAACCTGGACTGTGTGTTGGATTGCTCCACCATGATGGTTTTGATAGCCCTTGTGAATTCTTAAAGGTGAATCCTCAGTGTACTTCTGAAGGGTATGTTGATTACTTGAGGTTTTTCTATTGTAAATGTCAAGGTTTTAGGGTTCTTGGTTATCTGGTATTGGGTGTTTGGCTTGCTGCTTTGTTTTATCTCTTGGGGAATACTGCAGCGGATTATTTCTGTCCTTCTCTTGAGCATCTCTCGAAGCTCTTGAAATTGCCTCCAACTGTGGCAGGCGTTGTTTTGCTTCCACTTGGAAATGGCGCACCTGATGTGTTTGCTAGTATAGCTTCGTTTGTTGGGACTGATACGGGTGAAGTTGGTCTTAACAGTGTATTAGGCGGTGCTCTGTTTGTTACCACTATTGTTGTTGGAACTGTTTCTCTTTGTGTTGCGGACAGGAAGGTTCAAATTGATCAACGATGCTTTGTAAGGGACCTGAGTTTCTTTCTGTTCACCCTTTTTGTGCTGCTTGTGATTTTGTTTGTTGGTACGATAGGTATTGGGGCAGCCATTGCTTTTGTATCGATTTATGTTGTTTATGCGTTCATTGTTGCTGCCAATGAGCTATTGCGGAAACATGCACGGATGTTGAAACTGGATGCTGTGACACCTTTGCTCCCTGTCCAAGGAAGTGTATTCTCTGTTGCTTCTGAAGAGGATACGACAATATATAGCTCTTTGCTTGCCTTAGACACTGAGACTGATCCTCCTCGTCTCCCTCCTTCCCTGCCTCAGTGGATGTGGTCTTCAAATGTGGCAATATACTCAAACCAGGCAAATAAAATCAATTTTTCAGATGATGAGAGGCCTCCTTGGGGATGGAGTGATGGATCCACAGAAAACACCAGGTCGTCGTTCTCCATTTCAAAGCTTTTTTTACTCATGGAGATGCCACTGGCAGTACCTAGACGGCTAACAATTCCAATGGTTCACGAGGAAGTATGGTCAAAGTCCTTTGCCGTGGCCAGTGCTTCATTGGCTCCCATTCTTCTGGCCTTTTTGTGGAGCACCCAAGATGATCACACTTGGCATTCTTGCGTATAA 1365 0.43 MKALNGLLGLRRRKIHGVFNGLCAMVVLFFFYNREDIIRNPILRHSAYLVNHHGLPQNSILKDGVSVSVIRRRMDEISANTSSVAADNDLGVIKPGLCVGLLHHDGFDSPCEFLKVNPQCTSEGYVDYLRFFYCKCQGFRVLGYLVLGVWLAALFYLLGNTAADYFCPSLEHLSKLLKLPPTVAGVVLLPLGNGAPDVFASIASFVGTDTGEVGLNSVLGGALFVTTIVVGTVSLCVADRKVQIDQRCFVRDLSFFLFTLFVLLVILFVGTIGIGAAIAFVSIYVVYAFIVAANELLRKHARMLKLDAVTPLLPVQGSVFSVASEEDTTIYSSLLALDTETDPPRLPPSLPQWMWSSNVAIYSNQANKINFSDDERPPWGWSDGSTENTRSSFSISKLFLLMEMPLAVPRRLTIPMVHEEVWSKSFAVASASLAPILLAFLWSTQDDHTWHSCV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01223 454 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 19 448 - -
Vifa4g01223 454 Gene3D - 179 336 IPR044880 -
Vifa4g01223 454 Pfam Sodium/calcium exchanger protein 149 291 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01223 Vifa-Chr4 368873114 368874531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01223 100 445 Antiporters AT5G17860 38.439 2.85e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01223 K13754 - gmx:100796101 716.072