Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g01218 | ATGACTGCAAATAAAAACGCAAGTATATTGCAGACTGAGGATTTGACCAAGTATATACTGGAAACTAGTGTTTATCCACGAGAAGCAGAAACTCTCAAAGATATAAGGAATGCCAATGAAAGCTACCCTATGGGCTTCATGGGCACTGCACCTGATGCGGGTCAACTAATGGCCATACTCTTGAAGTTGTTGAATGCTAAAAAAACAATTGAAGTCGGAGTTTTTACCGGATACTCCCTTCTCCTCACCGCACTTTCCATTCCTCATGATGGAAAGATCATAGCCGTGGATCCAGACAGAAAAGCTTACGAAATAGGACTTCCATCCATTAAAAAGGCTGGTGTTGAACATAAGATTGATTACATAGAGTCTCAAGCTTTGCCAGTTCTTGATAAACTCTTAGAAAATCCTTCAAATGATGGAAATTTTGACTTTGCTTTTGTGGATGCTGACAAACATAATTATTGGAATTATCATGAGAGGCTTATTAAACTGGTTAAGATTGGTGGATTAATCATCTATGATAACACTCTTTGGGGTGGAACTGTTGCATTTCCTGAAGAAGCTGTTTTAGATCACCAAAGAAAAGTAAGACAAGATGCACTTGCTTTCAATGAAGCAATTGCAAGTGACACTCGTGTTGAAATTTGTCTTGCTTCAATTGGTGATGGTTTCACTATCTGTAGGCGTGCTCATTGA | 699 | 0.3877 | MTANKNASILQTEDLTKYILETSVYPREAETLKDIRNANESYPMGFMGTAPDAGQLMAILLKLLNAKKTIEVGVFTGYSLLLTALSIPHDGKIIAVDPDRKAYEIGLPSIKKAGVEHKIDYIESQALPVLDKLLENPSNDGNFDFAFVDADKHNYWNYHERLIKLVKIGGLIIYDNTLWGGTVAFPEEAVLDHQRKVRQDALAFNEAIASDTRVEICLASIGDGFTICRRAH | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g01218 | 232 | CDD | AdoMet_MTases | 70 | 174 | - | - | |
| Vifa4g01218 | 232 | Gene3D | Vaccinia Virus protein VP39 | 1 | 231 | IPR029063 | - | |
| Vifa4g01218 | 232 | PANTHER | O-METHYLTRANSFERASE-RELATED | 4 | 231 | - | - | |
| Vifa4g01218 | 232 | Pfam | O-methyltransferase | 21 | 230 | IPR002935 | GO:0008171 | |
| Vifa4g01218 | 232 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 12 | 230 | IPR029063 | - | |
| Vifa4g01218 | 232 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 8 | 231 | IPR002935 | GO:0008171 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g01218 | Vifa-Chr4 | 367695128 | 367696442 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g01218 | 1 | 232 | Monolignol Biosynthesis Gene Families | AT4G26220 | 61.638 | 9.37e-110 | 313 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g01218 | K00588 | - | gmx:100780516 | 362.073 |