Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01211 ATGGCCATAGCTCCAACAATTCTCCATCCATCATTCTTCATCTTGATCTTCAATATCATCATCAAATTTTCCATTACAAGTTCCATGACAGAAGCAGAAGCATTATTGAGTCTAAAAAACTCATTCACCAATTCTGATGCTCTTAATAATTGGATTGCCAACACTTTGCCTTGCGCCGAAGACGATCAATGGGAAGGCATAATATGTTACAACGGTTTAGTATCGGGTCTTCGCCTCGGTGGAATGGGACTATTAGGAAAAATTGATGTTGATGCATTGCTTGAACTCCGAGGTCTAAGAACTATTAGTCTTAATGATAATTTGTTTGAGGGTTCGATACCTGAATTGAATCGAATCGGTTACTTAAAAGCGATATATTTGTCGAGAAACAAATTTTCAGGACATATTCCTATGGAATATTTTCAAAATATGAAATCACTGAAGAAAATTTATTTATCTGATAATGAATTCACAGGTGAAGTTCCTTTATCATTGGCTGATGTTCCATCACTTGTTGACTTACATCTTGAAAATAATCAGTTTTCCGGTATCATTCCGAATTTGAATAGTCCTGCATTGGTGACATTGAATGTTTCAAACAATAATTTGGAAGGTGAAATTCCTGAAAGTTTGATGAGATTCAATGAGAGTTCTTTCTCAGGGAATGCTGGTTTATGCGGCGAGAAATTCGGTACAATATGTGGACAAACAATGATGCAGACAAAACCAAAACCAAAACCAAAACCTGTTAATGCACAAGATCTTAATAATATTACACAACTTAACAACACTAATAACAGTCATGTTTATGTGAGTGTGCCAGATCAAAGTAAGCATAGATCATTGCAGATTGTTGGTATTGTTGTAACATGTGCAGCACTAATTGCACTTGCTATATTTTTGATTGTGAGAGCAAGAAAAAAGAAAGAGAAGGACAAATCGAGCGATATCGGCGCGAAAAATGGACAGGAAAGTGTGACCGATTGTGGTGGAAGTTTTGAAGTTCAAGTGAGTAGTACTAGTATTTGTGGTAGTGATATTAGTAATAATCGTGTGAAAAGAGATACGAATTCGATGAAAAAAGCATCATCTAGTAGTAGAAGAAGTTCTTCGCATGGTAGTAAAGGGATAGGTGAGCTTGTGATGCTGAATGAGGAGAAGGGTGTGTTTGGTATGCCTGATTTGATGAAAGCTTCTGCTGAGGTTCTTGGAAATGGAGGCTTTGGGTCTTCTTATAAAGCTGTTATGTCTAATGGTGTTGCTGTGGTTGTGAAAAGGACTAGAGAGTTGAATGCTTTGGGAAAAGATGGTTTTGATGCTGAGATGAAAAAGCTTGCAAGGTTACATCATTGGAATGTTTTGACACCTTTGGCTTATCATTTTAGAAAAGATGAGAAGTTAGTTATCTCTGAGTATGTTCCTAGAGGAAGTCTACTTTATTTGTTGCATGGTGATAAAGGACCATCTCATAAAGAACTAGATTGGAACACACGTTTAAAGATTGTACAAGGAATTGCGAAAGGAATGCATTATCTTCACACAAAACTCTCTTCTTCTGATCTACCACATGGAAATCTCAAATCAAGCAATATTCTACTTGGACCAGAATATGAACCATTACTTATGGACTATGGTTTCATCCATCTAGTTAACCCTTCAAATTTTGCAAACACATTATTTGCTTATAAAGCACCAGAAGCCTCACAGCACAATCAACTATCGCCTCGTTGCGACGTATACTGTCTCGGCGTAGTCATACTCGAAATAATCACCGGAAAATACCCTTCGCAATATCTTAGCAACGGTAAAGGCGGAACCGATCTAGTACAATGGGTGGCATCAGCACTTTCTGAAGGAAGAGAGTTTGAACTACTTGATCCTGAAATCGCGAGTAAAAGAGATTCGTTAGACGATATGAAACAACTTGTTTCCATTGGTGCAGCGTGTACCGAAAGTAATCCTCAAAAGAGATTAGGTATGATGGAAGCAGCTAGAAGAATAGAAGAGATTAAAGCAAGTGAGGTTGATCATGTTCAAGAATCAAGAACAATAGAGGTTTTGCCTTCTTTTGATGATGATGGTTATGATGATGATCAAGAATCAAGGAGGAAACATGGAACAAATAGTTTTGGAAGTAAAGATACTTTGGATTTTGGTGTTTCTTAA 2166 0.3712 MAIAPTILHPSFFILIFNIIIKFSITSSMTEAEALLSLKNSFTNSDALNNWIANTLPCAEDDQWEGIICYNGLVSGLRLGGMGLLGKIDVDALLELRGLRTISLNDNLFEGSIPELNRIGYLKAIYLSRNKFSGHIPMEYFQNMKSLKKIYLSDNEFTGEVPLSLADVPSLVDLHLENNQFSGIIPNLNSPALVTLNVSNNNLEGEIPESLMRFNESSFSGNAGLCGEKFGTICGQTMMQTKPKPKPKPVNAQDLNNITQLNNTNNSHVYVSVPDQSKHRSLQIVGIVVTCAALIALAIFLIVRARKKKEKDKSSDIGAKNGQESVTDCGGSFEVQVSSTSICGSDISNNRVKRDTNSMKKASSSSRRSSSHGSKGIGELVMLNEEKGVFGMPDLMKASAEVLGNGGFGSSYKAVMSNGVAVVVKRTRELNALGKDGFDAEMKKLARLHHWNVLTPLAYHFRKDEKLVISEYVPRGSLLYLLHGDKGPSHKELDWNTRLKIVQGIAKGMHYLHTKLSSSDLPHGNLKSSNILLGPEYEPLLMDYGFIHLVNPSNFANTLFAYKAPEASQHNQLSPRCDVYCLGVVILEIITGKYPSQYLSNGKGGTDLVQWVASALSEGREFELLDPEIASKRDSLDDMKQLVSIGAACTESNPQKRLGMMEAARRIEEIKASEVDHVQESRTIEVLPSFDDDGYDDDQESRRKHGTNSFGSKDTLDFGVS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01211 721 MobiDBLite consensus disorder prediction 682 721 - -
Vifa4g01211 721 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vifa4g01211 721 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Vifa4g01211 721 SUPERFAMILY Protein kinase-like (PK-like) 401 667 IPR011009 -
Vifa4g01211 721 Pfam Protein kinase domain 401 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01211 721 Gene3D Ribonuclease Inhibitor 189 233 IPR032675 -
Vifa4g01211 721 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Vifa4g01211 721 MobiDBLite consensus disorder prediction 346 377 - -
Vifa4g01211 721 ProSiteProfiles Protein kinase domain profile. 397 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01211 721 Gene3D Transferase(Phosphotransferase) domain 1 473 689 - -
Vifa4g01211 721 SUPERFAMILY L domain-like 29 214 - -
Vifa4g01211 721 MobiDBLite consensus disorder prediction 696 710 - -
Vifa4g01211 721 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 673 IPR046959 -
Vifa4g01211 721 Gene3D Phosphorylase Kinase; domain 1 396 472 - -
Vifa4g01211 721 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 90 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01211 Vifa-Chr4 365911542 365914289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01211 19 670 Receptor kinase-like Gene Family AT3G42880 43.647 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa4g01211 Pkinase 1.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01211 - - tpra:123886727 998.808