Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01209 ATGACTAGTTTACCTAATACTTTGTCTGATGGCCGGAGAACAACCGCCGGTAAGGCGCCGGAGAAGTTCAAGTTTTCTCAGACTTGTAGTCTGTTGAGTCAATTCTTGAAGGAGAAGAGAATTTCTGGTGATTCTGCTTCTGGAATGTTTGGGAAAATTGAACCTAAAGGAGGTGGTAAGGATTTTTTTGGTAATATGAAAAACTCAGAAGGTGGTTTGAGACTAAATGCATCTGATATGGAATCTCTTCCTCAGCTTGTGGAAAATCCTTGCATTAAGAAAACTAATACAAGATCGACGGCTCCTGAAACGCCGCAACTGACGATTTTCTATGCCGGGAAAATGTTAGTATTCGACGCTTTTGCACCCGCGAACGCAACCGAGATCATGGAGTTGGCGACAAAGTTAGCCTCTGAAAATTCAAACACGGAAGAAAATCCCCCCTCTGCACCTGTCACAAGTGAAAAACCAAAATCAAAGGAATCACAAATTCCTCAACCGAACACTTCCCTAGAAACATCTAAACCAGAAAACCAAACCAATTCTTCAGATATGAGATATCCAAGAAGAGCCTCACTTCTTAAATTTCTTGAAAAAAGAAAAGAAAGGGTCATTGCTAGAGGACCTTACCAAATTAACAATCACAAAAATGAGGGTAATAATAGTTCAGGAGGAGAACCTAAAGGTCAACAACACTTTGACCTTAACTTATAG 714 0.4034 MTSLPNTLSDGRRTTAGKAPEKFKFSQTCSLLSQFLKEKRISGDSASGMFGKIEPKGGGKDFFGNMKNSEGGLRLNASDMESLPQLVENPCIKKTNTRSTAPETPQLTIFYAGKMLVFDAFAPANATEIMELATKLASENSNTEENPPSAPVTSEKPKSKESQIPQPNTSLETSKPENQTNSSDMRYPRRASLLKFLEKRKERVIARGPYQINNHKNEGNNSSGGEPKGQQHFDLNL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01209 237 MobiDBLite consensus disorder prediction 138 237 - -
Vifa4g01209 237 Pfam tify domain 102 133 IPR010399 -
Vifa4g01209 237 ProSiteProfiles Tify domain profile. 100 135 IPR010399 -
Vifa4g01209 237 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 218 IPR040390 -
Vifa4g01209 237 Pfam Jas motif 189 211 IPR018467 -
Vifa4g01209 237 SMART tify_2 100 135 IPR010399 -
Vifa4g01209 237 MobiDBLite consensus disorder prediction 138 187 - -
Vifa4g01209 237 MobiDBLite consensus disorder prediction 213 229 - -
Vifa4g01209 237 MobiDBLite consensus disorder prediction 46 65 - -
Vifa4g01209 237 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01209 Vifa-Chr4 364517278 364518912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01209 11 221 Tify Gene Family AT1G19180 33.058 1.03e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa4g01209 tify 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01209 K13464 - gmx:100815478 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01209 4 364517278 364518912 Vifa4g01209 4 364517278 364518912 ECH