Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01207 ATGCAGAATCATAGGTTGAAGCAACAGCAGCATCAACAACAGCAACAGCAACAGCAACAAGCTATGATGCAACAAGGGCTTCTTCAACAACAGTCTCTCTACCATCCTGGTCTCCTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGTAACGTTCATACCCAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCAGGTACTGGCCCAGTTGAAGGGTGTAAACTTTTTAGAAAAGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGGCATCTTTTTGGGCAACCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACACTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGCGGCATTGAAGAGAAGCAAACCCCAGAAAACAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAGGATGGTAAAGAGACACCTAACAACAATGATGCTCCCGAGAACAATCCTCAATATACAACTGTTTATGTGGGTAACCTTGGTTCTGAGGCAACACAGCTTGATCTCCATCGTCATTTCTATACCCTTGGAGCTGGTGTGATAGAGGAGGTGCGTGTCCAACGTGATAAAGGATTTGGGTTTGTGAGGTTTAGTACTCACGCGGAAGCAGCTCTGGCAATTCAGATGGGAAATGCTCAGTCTTATCTCTGCGGAAAACTAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCTCTTCCTCCACCTGCTGCTGCGCCTTTGCCAGGTCTGTCCGCAACTGATATTCTGACCTACGAGAGGCAGATAGCTATGAGCAAGATGGGTGGCGTTCATGCTGCACTGATGCATCCTCAAGCGCAACATCCTCTTAAGCAGGCTGCGATTGGAGCAAGCCAGGCGATATATGACGGCGGGTTCCAAAATGTCGCTGCTGCACAGCAAATGATGTACTACCAGTAA 1287 0.4662 MQNHRLKQQQHQQQQQQQQQAMMQQGLLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQTPENKSVVELTNGSSEDGKETPNNNDAPENNPQYTTVYVGNLGSEATQLDLHRHFYTLGAGVIEEVRVQRDKGFGFVRFSTHAEAALAIQMGNAQSYLCGKLIKCSWGSKPTPAGTASNPLPPPAAAPLPGLSATDILTYERQIAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01207 428 FunFam oligouridylate-binding protein 1-like isoform X2 145 240 - -
Vifa4g01207 428 Gene3D - 245 349 IPR012677 -
Vifa4g01207 428 Gene3D - 1 143 IPR012677 -
Vifa4g01207 428 Gene3D - 144 235 IPR012677 -
Vifa4g01207 428 FunFam oligouridylate-binding protein 1B-like isoform X2 1 144 - -
Vifa4g01207 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 347 - -
Vifa4g01207 428 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g01207 428 CDD RRM1_PUB1 64 134 - -
Vifa4g01207 428 SUPERFAMILY RNA-binding domain, RBD 60 225 IPR035979 GO:0003676
Vifa4g01207 428 SUPERFAMILY RNA-binding domain, RBD 256 349 IPR035979 GO:0003676
Vifa4g01207 428 CDD RRM2_PUB1 146 225 - -
Vifa4g01207 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 344 IPR000504 GO:0003723
Vifa4g01207 428 FunFam Oligouridylate-binding protein 1C 245 348 - -
Vifa4g01207 428 MobiDBLite consensus disorder prediction 227 267 - -
Vifa4g01207 428 MobiDBLite consensus disorder prediction 239 267 - -
Vifa4g01207 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 328 IPR000504 GO:0003723
Vifa4g01207 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 219 IPR000504 GO:0003723
Vifa4g01207 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 130 IPR000504 GO:0003723
Vifa4g01207 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723
Vifa4g01207 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 136 IPR000504 GO:0003723
Vifa4g01207 428 SMART rrm1_1 63 132 IPR000504 GO:0003723
Vifa4g01207 428 SMART rrm1_1 148 221 IPR000504 GO:0003723
Vifa4g01207 428 SMART rrm1_1 270 340 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01207 Vifa-Chr4 364017978 364022050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01207 57 336 Eukaryotic Initiation Factors Gene Family AT1G49760 29.392 2.30e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01207 K13201 - gmx:100814415 746.117