Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01199 ATGGCTACCAAAGATTCACCAATGAACTTTCCCGAAATCATCATCGAAAGTGAAGGATCCAACCCAAGTTCAGAATGGGACGATTCAGAAGAAGACCCGGATTTCGAAATGCTCCAAGAAACCCATCGAAGCTTCTCCAACCTCTCACTCAAAAACAAGGCGAAAAAGCGCATAGTTGATGATAAAGGTATGGCTGATTCTGAGATCGATTCGGAAGTGGTTAAGATCAGTGCAGTTTCTGTTGATGATGAAGGTTTTGAAACAGTTCAGAAGTTAATAAAGGATGGATTGCTAGAGAAACTGAAAGTGGACCAATGCAAGATGTATTTGAAGAAGAATGGTCTAAGGTTAACCGGAAATAAGGACACACTTATCCAGCGTATTAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAAAAAATACCCGCCTCATAGCTTTGTTTTGAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAGAATGTGTATGAAATGTTCAACATAGCATCTAGGAGTGCCAGCGGTCCTCCGAGTGGCACAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGCAAGGGAGAGAAGCCCCTACCTCCACTTCATCCTCTACTGATAAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAGATGGGAAGATGAAGACAAAAGGAGGAATATGTTAATGGAAAAACACTCTCGGGGATTCGTTGCTAGGGCTGATAGGGAAGCAAGGGTACAAGAAAAGGAGCTGCGAAAATCAATGAAGGAAAATAGGATCTCCAAAAAAGATTCTGGGAAGAACCAATTCCAATCACATTCACAAACTCAACCCCGAGAAACAAAAAATGTATTCATTACTTCAACATCTGCAAGTTTACCTAAATCAGCAGCGGTAACTGAACAGCTTGTTCAATCTATTGATTCTCGAACTGTTGCAATGGGATCTTCTAACCAGTTCAGAAATTCAGGAAATTCATCTGTTAGCACAAACTACCATTCTGCAGTCAACCATTTCAGAGACAAACCTATTAGTCTCGAGGGATACCACCCTTCCATTGTTGACACAAACAACTTTGCAGAGAGATTTTTTCATCCAAGGAAGCCTTTGACAAGTGCAAATCACTTTTTTCCGTGTCTGCCGAATGCAAATCACATGCATGCAGGGTTCACAAACCGAGAAAGCTATCAGCAAAAACAGTTTTGTAGACATTTTGCTAGGGGAAGATGCCATTTTGGAGATAACTGCAAGTTCTTGCATGGTTGA 1341 0.4161 MATKDSPMNFPEIIIESEGSNPSSEWDDSEEDPDFEMLQETHRSFSNLSLKNKAKKRIVDDKGMADSEIDSEVVKISAVSVDDEGFETVQKLIKDGLLEKLKVDQCKMYLKKNGLRLTGNKDTLIQRIKEHQEIINGGGEKKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPSGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQRWEDEDKRRNMLMEKHSRGFVARADREARVQEKELRKSMKENRISKKDSGKNQFQSHSQTQPRETKNVFITSTSASLPKSAAVTEQLVQSIDSRTVAMGSSNQFRNSGNSSVSTNYHSAVNHFRDKPISLEGYHPSIVDTNNFAERFFHPRKPLTSANHFFPCLPNANHMHAGFTNRESYQQKQFCRHFARGRCHFGDNCKFLHG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01199 446 Coils Coil 262 282 - -
Vifa4g01199 446 Gene3D SAP domain 87 144 IPR036361 -
Vifa4g01199 446 ProSiteProfiles SAP motif profile. 98 132 IPR003034 -
Vifa4g01199 446 PANTHER SAP DOMAIN-CONTAINING PROTEIN 21 358 - -
Vifa4g01199 446 SUPERFAMILY SAP domain 88 132 IPR036361 -
Vifa4g01199 446 Pfam CCCH-type zinc finger 427 446 IPR041367 -
Vifa4g01199 446 MobiDBLite consensus disorder prediction 292 308 - -
Vifa4g01199 446 MobiDBLite consensus disorder prediction 1 33 - -
Vifa4g01199 446 Gene3D - 411 446 - -
Vifa4g01199 446 SMART sap_9 98 132 IPR003034 -
Vifa4g01199 446 Pfam SAP domain 98 131 IPR003034 -
Vifa4g01199 446 MobiDBLite consensus disorder prediction 264 308 - -
Vifa4g01199 446 MobiDBLite consensus disorder prediction 264 291 - -
Vifa4g01199 446 SUPERFAMILY CCCH zinc finger 422 446 IPR036855 GO:0046872
Vifa4g01199 446 ProSiteProfiles Zinc finger C3H1-type profile. 421 446 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01199 Vifa-Chr4 363007196 363009838 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g01199 SAP 7.9e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01199 - - gmx:100815642 498.049