Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01198 ATGGCTGATTCTTCCTTTGAGATAGACACCAACCAGAGAAGGCACTATCCAACTCCAGTGAGTTATCACAGTGTTTCTGGCTCTAGCTCCTTCATACATTCCACTTCTCGAAGCAACGTGACTCCGAGAACGAGAAGAACTCGTCGCAACAGAATTCCATCCACACCATTTGCCTCAGACGACGACCGTTCATGGCAAAGTGAGGTTTCGTGGAAGTTTGAACCAACCGGGTTGCGTGAACATAGCACAAATTTCGGTTCTGTTCTTAGTCCATGGCCAACCAACTCCGCATCTGATCGTAGCCGTGTGTTTCGCCAGTCGGCTAATGACTATTACCTTGCAAGAATAGGCGGTTTTCGTGACCATACAAACTCAACAAATGAACATTCTTCGTATGGGAGAGTTGAACTTAGGAGCCATGTTGCTAGGGATAATAATGATCATAGTTACTTTGATCATTATAGTGGGTTCTCCAAATTGGGAATCATCAAAGAAGGAATTAGTAGCAGAAATCGTAATATTCATAATAAGACTAGTCCATTAGCTGAAGAAGACGAGCTCAGTGCGATCGATTATAGTGTATCAGATGAACATGTTAAACATGATCGTGATCATGGTCATGCAGTACCACCGTATGGTAGCAAATCTCCGAGTCAAATTTATGGTGGTGGTGGCGGTTATAGTCATTATGAGAGTAAAATGGTATCAGGATATGATGATGGAGGAGATGAGGATATGGATGAGGATGATGATGATGCTGCAGGTCCTCCAAAGAATGTTGGGCTGTTTAGCTTGTTTAGATATACAAGAAATTGGGATTGGTTACTTGTGTTTATCGGCTGCGTAGGTGCTCTTATAAACGGCGGATCACTTCCTTGGTATTCTTATCTTTTTGGAAACTTGGTTAACAAGCTTTCAAGAGAAGCAAAAAATGACAAAGGTCAATTGATGAAGGATGTTGAGCAGATATGTGTATTTATGACTGGCTTAGCTGCAGTTGTGGTAGTTGGAGCATATATGGAGATTACATGTTGGAGACTAGTTGGGGAGAGATCAGCTCAAAGAATAAGAACCGAGTATCTAAGAGCAATTCTTCGACAGGACATAAGTTTTTTCGATACGGAGATTAATACCGGGGATATTATGCATGGAATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCTCACTTCATTCATCATGTGTTTACATTCATATGTGGATATGCTGTTGGATTTAAAAGATCATGGAAAGTATCGTTGGTAGTTTTCTCGGTCACACCATTAACAATGTTATGTGGTATGACTTACAAAGCACTTTATGGTGGTCTAACCGCAAAAGAAGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGACCATAAGTTCGATTAGGACAGTGTTTTCTTTTGTTGCTGAAAGCCAGTTGGGTGAAAAATATTCTGAGTTACTTCAAAAATCAGCTCCAATTGGTGCCAGAATTGGTTTTGCTAAAGGTGCAGGAATGGGTGTTATCTACTTAGTAACATATTCAACATGGGCTTTGGCTTTTTGGTATGGTTCTATCTTAATTTCCAAAGGTGAACTTGATGGTGGTTCTGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGTGGAAGAGGCTTGGCATTGGCACTTTCGTATTTTGCACAATTTGCACAAGGAACTGTTGCAGCAAGCCGTGTGTTCTATATTATAGATAGAATTCCCGAGATTGATCCGTACAATTCTGAGGGTAGGAAGCTTTCGTCTGCTCGCGGAAGGATAGAGTTAAAGAATGTTAGTTTTGCATATCCATCTCGTCCGGATTCACTTATACTTAATTCCATTAATTTGGTATTTCCATCTTCGAAAACTTTGGCGTTGGTTGGTGCAAGTGGAGGTGGAAAATCAACTATCTTTGCTCTCATAGAAAGGTTTTATGACCCTATTGAAGGGATTGTTACCTTGGATGGTCATGATTTGAGGACACTGCAAGTAAAGTGGTTAAGGGATCAGATTGGGATGGTTGGTCAAGAGCCAGTTCTGTTCGCTACATCTATACTCGAAAATGTGATGATGGGGAAAGATAATGCCACCAAGGAAGAAGCAATTTCTGCTTGTATTGCTGCGGATGCTCACAAATTCATCTCTAGCTTGCCGTTACGTTATGACACTCAGGCTGGTGATAGAGGTACAAAACTTTCAGGAGGTCAAAAGCAAAGAATTGCATTGGCTAGAGCAATGATAAAGAATCCTAAAATTCTTCTTTTAGATGAACCGACTAGTGCTCTTGATGCTGAGTCGGAGGCTGCAGTCCAAAGGGCTATTGACAAGATTTCTGCAGGCAGAACAACCATTGTCATTGCTCATAGGATAGCTACAGTGAAGAATGCAGATGCCATTGTAGTTCTTGAACATGGTTCTGTAACTGAGATCGGTGACCATCGTCAGCTTATGGCGAAATCCGGAACCTACTACAACCTTGTCAAACTTGCAACTGAGTCCATTTCAAAACCTCTTCCTGTAGAAAACAATGGCATGCAAAAAGCCAACGATTTATCGTCCATCAATAATAAATATGCTTCTGATATAGCAAAATCAAGTTATCTAGTTGATATCTCGAGGTCTAAGCACATGGATTCAATGCAGGATGAGAGTCAAGAAGATATTGAAGACAAACAAGACAAAAAGCCAAGAAAATACAAACTTTCTGAGGTATGGAAATTGCAAAAGCCGGAGTTTATGATGCTTTCTTCAGGTCTTGTTATGGGAATGTTTGCAGGCGCTTTTCTTTCCCTTTTTCCATTGGTTTTAGGCATCTCCCTTGGAGTATATTTTGGCAATGATACTTCAAAAATGAAAAGAGATGTAGGTTACCTTTGTTTAGTACTTGTCGGACTCGGATTCGGTTGCATACTTTCCATGACAGGACAACAAGGTTTATGTGGTTGGGCAGGTTCAAAACTAACACTCAGGGTTAGAAACCTCTTGTTTCAATCAATACTAAGACAAGAACCTGGATGGTTTGATTTTGATGAAAACTCGACCGGTGTATTGGTATCAAGACTCTCAATAGACACCGTTAGTTTCCGTTCAGTACTCGGCGACAGATTTTCAGTACTTCTTATGGGATTGAGTTCAGCTGCTGTTGGACTTGGCGTGTCCTTCGCCTTCAACGTGAAGTTAACCCTTGTTGCAGCTGCTGTAACTCCTTTGACCCTTGGTGCAAGTTACATAAACTTGATCATAAACATTGGTCCGAAAATCGATAACAACTCGTATGCAAGAGCTAGCAATATTGCTTCCGGTGCAGTTTCAAATATAAGGACAGTAGCTACATTTTCTGCTCAGGAACAAATAGTTAAATCCTTTGATAAAGCCTTATCAGAACCGAGGAAAAAATCATTAAAAAGTTCACAGCTTCAAGGTCTTGTTTTTGGACTTTTTCAAGGTGCCATGTATGCAGCATACACCTTAACTCTTTGGTTCGGCGCATACCTTGTAAAACACGACGAAGGAAAATTTGAAGATGTTTATAAGATTTTTCTCATTCTTGTTTTGAGTTCATTTTCTGTTGGACAACTAGCTGGTTTAGCACCTGATACTTCTATGGCCGCTACATCAATTCCTGCAGTTCAAGATGTTATAAACAGAAAACCATTGATAGGAAGTGATGGAAGAAAAACTAGAAAAGTTGATAAATCAAAGAGCTTCAAAATAGAATTCAAAATGGTTACATTTGCATATCCATCAAGGCCAGAGATAACAGTGCTAAGGGATTTCTGCTTGAAGGTTAAAGGCGGAAGTACCGTGGCATTGGTGGGACCAAGTGGATCAGGAAAATCAACCGTTGTGTGGATGACACAACGGTTTTATGATCCTGATCAAGGGAAGGTTATGATGAGTGGTGTCGATTTGAGGGAGATTGACGTTAAGTGGTTGAGGAGACAAATCGGTTTGGTTGGTCAAGAACCTGCACTTTTTGCTGGGAGTATAAGGGAAAATATTGCATTTGGTGACCAAAAGGCCTCATGGGCTGAAATTGAAGCTGCTGCAATGGAGGCTTACATTCACAAGTTTATCAGTGGACTTCCTCAGGGTTATGAAACTCAGGTTGGTGAGAGCGGAGTCCAATTATCAGGTGGACAAAAACAAAGAATAGCTATAGCAAGGGCAATATTGAAGAAATCAAAGGTTCTTCTACTTGATGAAGCAAGTAGTGCATTGGACTTGGAATCAGAAAAACACATCCAAGAAGCTCTTAAGAATGTTTCAAAAGAAGCAACAACCATAATCGTTGCACACCGTCTTTCCACGATCAGAGAAGCTGATAAAATTGCAGTAATGAGAAATGGTGAAGTTGTAGAGTATGGTAGCCACGACACTCTTATTTCTTCACTTCAAAATGGTTTGTATGCTAGCCTTGTTAGAGCTGAGACTGAAGCCAATGCATTTTCTTGA 4482 0.4058 MADSSFEIDTNQRRHYPTPVSYHSVSGSSSFIHSTSRSNVTPRTRRTRRNRIPSTPFASDDDRSWQSEVSWKFEPTGLREHSTNFGSVLSPWPTNSASDRSRVFRQSANDYYLARIGGFRDHTNSTNEHSSYGRVELRSHVARDNNDHSYFDHYSGFSKLGIIKEGISSRNRNIHNKTSPLAEEDELSAIDYSVSDEHVKHDRDHGHAVPPYGSKSPSQIYGGGGGYSHYESKMVSGYDDGGDEDMDEDDDDAAGPPKNVGLFSLFRYTRNWDWLLVFIGCVGALINGGSLPWYSYLFGNLVNKLSREAKNDKGQLMKDVEQICVFMTGLAAVVVVGAYMEITCWRLVGERSAQRIRTEYLRAILRQDISFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFKRSWKVSLVVFSVTPLTMLCGMTYKALYGGLTAKEEASYRKAGSIAEQTISSIRTVFSFVAESQLGEKYSELLQKSAPIGARIGFAKGAGMGVIYLVTYSTWALAFWYGSILISKGELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYIIDRIPEIDPYNSEGRKLSSARGRIELKNVSFAYPSRPDSLILNSINLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIVTLDGHDLRTLQVKWLRDQIGMVGQEPVLFATSILENVMMGKDNATKEEAISACIAADAHKFISSLPLRYDTQAGDRGTKLSGGQKQRIALARAMIKNPKILLLDEPTSALDAESEAAVQRAIDKISAGRTTIVIAHRIATVKNADAIVVLEHGSVTEIGDHRQLMAKSGTYYNLVKLATESISKPLPVENNGMQKANDLSSINNKYASDIAKSSYLVDISRSKHMDSMQDESQEDIEDKQDKKPRKYKLSEVWKLQKPEFMMLSSGLVMGMFAGAFLSLFPLVLGISLGVYFGNDTSKMKRDVGYLCLVLVGLGFGCILSMTGQQGLCGWAGSKLTLRVRNLLFQSILRQEPGWFDFDENSTGVLVSRLSIDTVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNVKLTLVAAAVTPLTLGASYINLIINIGPKIDNNSYARASNIASGAVSNIRTVATFSAQEQIVKSFDKALSEPRKKSLKSSQLQGLVFGLFQGAMYAAYTLTLWFGAYLVKHDEGKFEDVYKIFLILVLSSFSVGQLAGLAPDTSMAATSIPAVQDVINRKPLIGSDGRKTRKVDKSKSFKIEFKMVTFAYPSRPEITVLRDFCLKVKGGSTVALVGPSGSGKSTVVWMTQRFYDPDQGKVMMSGVDLREIDVKWLRRQIGLVGQEPALFAGSIRENIAFGDQKASWAEIEAAAMEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQEALKNVSKEATTIIVAHRLSTIREADKIAVMRNGEVVEYGSHDTLISSLQNGLYASLVRAETEANAFS 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01198 1493 SMART AAA_5 629 815 IPR003593 GO:0016887
Vifa4g01198 1493 SMART AAA_5 1274 1460 IPR003593 GO:0016887
Vifa4g01198 1493 Gene3D - 600 866 IPR027417 -
Vifa4g01198 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01198 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 278 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01198 1493 MobiDBLite consensus disorder prediction 885 904 - -
Vifa4g01198 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1484 IPR027417 -
Vifa4g01198 1493 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1098 1238 - -
Vifa4g01198 1493 PANTHER ABC TRANSPORTER B FAMILY 248 983 IPR039421 -
Vifa4g01198 1493 SUPERFAMILY ABC transporter transmembrane region 904 1227 IPR036640 GO:0005524|GO:0016020
Vifa4g01198 1493 Gene3D - 1236 1487 IPR027417 -
Vifa4g01198 1493 CDD ABC_6TM_Pgp_ABCB1_D1_like 278 575 - -
Vifa4g01198 1493 Gene3D ABC transporter type 1, transmembrane domain 1215 1490 IPR036640 GO:0005524|GO:0016020
Vifa4g01198 1493 Pfam ABC transporter transmembrane region 277 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01198 1493 Pfam ABC transporter transmembrane region 928 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01198 1493 ProSitePatterns ABC transporters family signature. 1386 1400 IPR017871 GO:0005524|GO:0016887
Vifa4g01198 1493 Gene3D ABC transporter type 1, transmembrane domain 325 1214 IPR036640 GO:0005524|GO:0016020
Vifa4g01198 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1247 1483 IPR003439 GO:0005524
Vifa4g01198 1493 FunFam ABC transporter B family member 1 592 840 - -
Vifa4g01198 1493 SUPERFAMILY ABC transporter transmembrane region 259 586 IPR036640 GO:0005524|GO:0016020
Vifa4g01198 1493 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Vifa4g01198 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 838 IPR027417 -
Vifa4g01198 1493 FunFam ABC transporter B family member 1 1236 1487 - -
Vifa4g01198 1493 CDD ABC_MTABC3_MDL1_MDL2 602 839 - -
Vifa4g01198 1493 Pfam ABC transporter 1266 1413 IPR003439 GO:0005524
Vifa4g01198 1493 MobiDBLite consensus disorder prediction 199 220 - -
Vifa4g01198 1493 MobiDBLite consensus disorder prediction 1 62 - -
Vifa4g01198 1493 Pfam ABC transporter 620 769 IPR003439 GO:0005524
Vifa4g01198 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 838 IPR003439 GO:0005524
Vifa4g01198 1493 MobiDBLite consensus disorder prediction 1 41 - -
Vifa4g01198 1493 CDD ABC_6TM_Pgp_ABCB1_D2_like 914 1229 - -
Vifa4g01198 1493 CDD ABC_MTABC3_MDL1_MDL2 1247 1485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01198 Vifa-Chr4 362940906 362946307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01198 897 1490 Calmodulin-binding Proteins AT2G36910 36.500 5.69e-105 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01198 K05658 - gmx:100816700 2260.34