Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01196 ATGGACGACGACGATGAGATCCACTCCATTCCATCGCCGTTGAGCGGATCTCCGGCGTCATCAATTGGTCGGATTTCGGTGACGGTTGCGGCGCCTGCTCCGCAAACGCAAGAGCATCCGGTGGTGAACAGCTACGCATTAGCACTTCCGATTCAGAATCAAGCGAGAGGAAGCAACGGTGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTCCTGATCGAGGCGTGGGGAGAGAGGTATCTGGAATTGAGCAGAGGGAATCTGAAGCAAAAGCATTGGAAGGAGGTGGCGGAGATCGTTAACGGGAGAGAGGATTATTTGAAGGCGCCGAAAACTGATATCCAGTGCAAGAACCGGATCGATACGGTTAAGAAGAAGTATAAATCGGAGAAGGCTAAGATCGCCGCCGGTGGCGGCGTCGGAGTTAGTAAATGGCCGTTTTATGATCGGTTAGAATACCTGATCGGTCCAGGTCCAACCGCCAAGATCACCGGCGTCACAGGTGGCAGCACTTCCGGAAACAGTAAATTGCCACCGCAGAAAGTTCCGTTAGGAATTCCGGTAAATCTTCGCAGCGGTGGTGTTTCAAATCAGTTCAACTCTCAAAAGAAAAATCAGAAGCAACAGCAACAACAACAGCCACAGGTTCAGTTGAATTACCAGAAGGTTCAACTCCGACCTCGAGCTCATGCTATCGATTCGGATAATTCGTCGGAACGAGAAGCGTTATCACCAGTTTCGAGTGACAGTTTACCACCGGAGAGTCACGAGAGGAAGAGGGCGAAAGTGAATTCGACTGGTTGGGGAAGTGCTGTGAGAGAATTGACTCAGGCGATAGTGAAATTCGGTGAAGCTTATGAACAAGCGGAGACATCGAAGTTGCAGCAGATAGTGGAGATGGAGAAACAGAGGATGAAGTTTTCAAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAAACACAGTTGGAGATTTCACAGCTCAAGGTTGGAAGAAGAAAAAGTGTTAATGGTAATGGTAATGGTAACCCTAGCAATCATCATAACAACATCAATGAAAACATCAACAACAACAACCATAACAATAATAGTGACACCGAATGA 1116 0.4857 MDDDDEIHSIPSPLSGSPASSIGRISVTVAAPAPQTQEHPVVNSYALALPIQNQARGSNGGGREDCWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVNGREDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGVGVSKWPFYDRLEYLIGPGPTAKITGVTGGSTSGNSKLPPQKVPLGIPVNLRSGGVSNQFNSQKKNQKQQQQQQPQVQLNYQKVQLRPRAHAIDSDNSSEREALSPVSSDSLPPESHERKRAKVNSTGWGSAVRELTQAIVKFGEAYEQAETSKLQQIVEMEKQRMKFSKDLELQRMQFFMKTQLEISQLKVGRRKSVNGNGNGNPSNHHNNINENINNNNHNNNSDTE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01196 371 Gene3D - 67 132 - -
Vifa4g01196 371 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g01196 371 MobiDBLite consensus disorder prediction 194 268 - -
Vifa4g01196 371 MobiDBLite consensus disorder prediction 194 225 - -
Vifa4g01196 371 MobiDBLite consensus disorder prediction 333 371 - -
Vifa4g01196 371 MobiDBLite consensus disorder prediction 336 371 - -
Vifa4g01196 371 FunFam trihelix transcription factor ASIL2 67 132 - -
Vifa4g01196 371 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 39 335 IPR044823 -
Vifa4g01196 371 Pfam Myb/SANT-like DNA-binding domain 64 155 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01196 Vifa-Chr4 361950994 361952109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01196 1 354 Trihelix Transcription Factor Family AT3G14180 45.958 3.61e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa4g01196 Myb_DNA-bind_4 1.2e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01196 - - cam:101508093 442.58