Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01195 ATGGCTAATGAAGGAAACAAAAGCAGTGATTTTTATGCGGTTTTGGGATTGAATAAAGAATGCACTGATTCTGAGCTAAGAAATGCTTATAAGAAACTTGCAATGAAATGGCACCCAGATCGTTGTTCAGCTTCAGGAAATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCGATTCAAGAGGCCTATTCTGTTTTATCTGACGCGAATAAGAGGTTAATGTACGACGTTGGAGTTTACGACAATGATGATGACGATGAAAATGGTATGGGTGACTTTTTGAATGAAATGGTTACAATGATGAGTCAAACTACATCAAACGAAAATGGAGAGGAGAGTTTTGAGGAGTTGCAGCAGTTGTTTAGTGATATGTTTCAAGCAGATATTGGATTAGATGGAAGCAATTCTATGAATGCTTCTGGTTGCTCCACTTCATCTACTTTCATGAATTATAACGAAAGTTCTAATTCTAATAAACGCAATTCCAACCAGATGAATTATGGAATGGCAGGGGATTCGTCTAGCTTCGATTCTAATTATCAGAACTTCTGTTTTGGGGTGAAGCGCCTTCAAGAAGATGTGGAGGAGAAGGTAAAAGGGGGAATTCAAGAAGGAGGAGGTAGCAATAGACAAAGAAAGGGTAGAAAACAAAAAATCTCATATGGCCATGATGTTTCCTCTAATGACAATAATGCAATTTCTGCAAACTAG 717 0.378 MANEGNKSSDFYAVLGLNKECTDSELRNAYKKLAMKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDANKRLMYDVGVYDNDDDDENGMGDFLNEMVTMMSQTTSNENGEESFEELQQLFSDMFQADIGLDGSNSMNASGCSTSSTFMNYNESSNSNKRNSNQMNYGMAGDSSSFDSNYQNFCFGVKRLQEDVEEKVKGGIQEGGGSNRQRKGRKQKISYGHDVSSNDNNAISAN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01195 238 CDD DnaJ 10 70 IPR001623 -
Vifa4g01195 238 SMART dnaj_3 9 73 IPR001623 -
Vifa4g01195 238 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vifa4g01195 238 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vifa4g01195 238 Pfam DnaJ domain 10 78 IPR001623 -
Vifa4g01195 238 Gene3D DnaJ domain 7 138 IPR036869 -
Vifa4g01195 238 MobiDBLite consensus disorder prediction 223 238 - -
Vifa4g01195 238 SUPERFAMILY Chaperone J-domain 7 87 IPR036869 -
Vifa4g01195 238 MobiDBLite consensus disorder prediction 200 238 - -
Vifa4g01195 238 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vifa4g01195 238 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vifa4g01195 238 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vifa4g01195 238 PANTHER PUTATIVE, EXPRESSED-RELATED 2 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01195 Vifa-Chr4 361106544 361109746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01195 12 78 C2H2 Transcription Factor Family AT1G74250 40.299 7.19e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01195 - - lang:109338829 322.398