Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01183 ATGTGTGGTGGTGCTATTATCTCCGACTTCATCCCACCTACGGCGGCGGTGGGTGGTTCCCGCCGTGTGACTGCTGATATCTTGTGGCCGAGTTTGAGGAAAAACGGGTTGAAGAAACCGTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTTAAGGATGATTCTGATTTTGATGAGGACGAGGATGAAGAGGAAGATGAAGGGTTGATGCTCGGTGTGAAAGGTTTCTCTTTCTCTTCTGCCAATAACAAATCTTCAAGGACCTTCTCTCGTGGATCGAGTGCTGCAAAACCTGTGGTATCGAAATCGAATGAGCCGGCTGAAAAGGATTCAAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGACAACGTCCTTGGGGAAAATGGGCAGCTGAGATTCGTGACCCGAGGAAAGGAGTTCGTGTTTGGCTCGGAACATTCAACACTGCTGAGGAAGCTGCGAGAGCTTATGATGCTGAAGCTAGGAGAATCCGCGGCGCGAAAGCCAAGGTGAACTTCCCTGAAGAGACTCCAAATGCTTGCACAAAACGTGTTAAGCCAAATGCTGAGACGGAGCCGATGAATAAGTTCAAACCGAATGGGAACACAATGTTCAATTTCGGCGAGAATATGGAGAGCTACTATTCCCCTATGGATCAGGTTGAACAGAAGCCGATGGTTAACAACCAGTTTGCTAACGTGGGAGCGTTTGCAGGAAATGGATTTCAGCTTGCAGCTGCTGCTGATGTTAATGCCTACTTCAGCTCAGAGCATTCGAGCAACTCGTTTGATTATTCTGATCTAGGTTGGGGCGAACAAGCCCCGAAAACCCCTGAGATTTCGTCTGTGTTTTCCGCTCCTGCTCCTCGGGAAGGCGAATCTCAGATCAATCTGCTGTCTAACAATGCTCAGGACATGCTGCCTATGCAAGATGAGTCTGCAAAGACACTCTCTGAGGAGCTTGCTGATATCGAATCCCAGCTGAAGTTCTTCGAGAACTCGTTTGATGATAACTGGAGTGATGCTTCATTGGCGTCTCTGCTCGGTACTGATTCAGTTCAGGATTGTGGAAACACAATGAATCTCTGGAGCTTTGATGACATGTCCGCCATCTCCGGCGGAGTTTTCTGA 1143 0.4821 MCGGAIISDFIPPTAAVGGSRRVTADILWPSLRKNGLKKPFLLDDDFEAGFREFKDDSDFDEDEDEEEDEGLMLGVKGFSFSSANNKSSRTFSRGSSAAKPVVSKSNEPAEKDSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGAKAKVNFPEETPNACTKRVKPNAETEPMNKFKPNGNTMFNFGENMESYYSPMDQVEQKPMVNNQFANVGAFAGNGFQLAAAADVNAYFSSEHSSNSFDYSDLGWGEQAPKTPEISSVFSAPAPREGESQINLLSNNAQDMLPMQDESAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGTDSVQDCGNTMNLWSFDDMSAISGGVF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01183 380 MobiDBLite consensus disorder prediction 86 125 - -
Vifa4g01183 380 Coils Coil 318 338 - -
Vifa4g01183 380 MobiDBLite consensus disorder prediction 86 103 - -
Vifa4g01183 380 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Vifa4g01183 380 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Vifa4g01183 380 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Vifa4g01183 380 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Vifa4g01183 380 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Vifa4g01183 380 ProSiteProfiles AGC-kinase C-terminal domain profile. 25 91 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa4g01183 380 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Vifa4g01183 380 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Vifa4g01183 380 PANTHER DNA-BINDING DOMAIN 85 276 IPR044808 GO:0003700|GO:0009873
Vifa4g01183 380 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Vifa4g01183 380 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01183 Vifa-Chr4 355783293 355785272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01183 1 380 AP2-EREBP Transcription Factor Family AT3G14230 43.521 6.54e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g01183 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01183 K09286 - gmx:100818646 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01183 4 355783293 355785272 Vifa4g01183 4 355783293 355785272 ECH