Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01179 ATGAGAAACGGCAAATTCATTTCATGCATTCCATCTACTAGCAAACACTTCTTAAAGAAAAATATTTGTGAGATCATTGAGGGAAATTCATCCTCTATAATAGATGAAGATAAGTTTTATGATGCTGAAGAAAATTTTCCAATATATGATGACAAGTATGTCGTAGAAATTCAAGTAGTGGATAGTGAGGATAACACACCATTGACAAACCACAAACACAAACAAAAGGAGACTATTGAAGATAAATATTCTACTCAATTGAAACAATCCTACTGTTCTATTTGTATGGAAGCTAAACCAATTAAAGAAATTTTCAAAAATCCAAATTGTCTACACTCTTTCTGTAAGGATTGTATTGGAAGATATCTAGCTGCAAAAGTTCAAGAGAATATATCAAAGGTAAGTTGTCCCGAACCAAACTGCAAAGGAACTTTAGAGGCTTATCATTGTAGTTCAATTATACCAAATGATCTATTCGATAGATGGGAAAATGCACTTTGTGAGAATTCGGTATTAGCATCACAAAAATTTTATTGTCCTTTTAAGGATTGTTCAGCTATGTTGGTGAATGATGCAAAGGAAGTTGTGACGGCTTCAGAATGTCCACATTGTCATCGATTATTCTGTGCACAATGTAGGGTTTCGTGGCATGCAGGAGTTGATTGTAGAAAGTTTAAAAGTTTGAAAAACAATGAGCGAGGGAAGGAAGATTTATTGGCGATGAATCTTGCAAAGAAAAAGAATTGGAAAAGATGTCCAAAATGCAAATACTATGTAGAAAAAGTTCATGGATGTACTCATATTACATGCAGGTGTGGTCATCAATTTTGCTATGGATGTGGATGCACTTGGACAGGAGGATCCCATTATAAATGTAAAGTTCGATAA 888 0.3401 MRNGKFISCIPSTSKHFLKKNICEIIEGNSSSIIDEDKFYDAEENFPIYDDKYVVEIQVVDSEDNTPLTNHKHKQKETIEDKYSTQLKQSYCSICMEAKPIKEIFKNPNCLHSFCKDCIGRYLAAKVQENISKVSCPEPNCKGTLEAYHCSSIIPNDLFDRWENALCENSVLASQKFYCPFKDCSAMLVNDAKEVVTASECPHCHRLFCAQCRVSWHAGVDCRKFKSLKNNERGKEDLLAMNLAKKKNWKRCPKCKYYVEKVHGCTHITCRCGHQFCYGCGCTWTGGSHYKCKVR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01179 295 ProSitePatterns Zinc finger RING-type signature. 110 119 IPR017907 -
Vifa4g01179 295 CDD BRcat_RBR_unk 173 222 - -
Vifa4g01179 295 Gene3D - 219 294 - -
Vifa4g01179 295 ProSiteProfiles Zinc finger RING-type profile. 92 137 IPR001841 -
Vifa4g01179 295 ProSiteProfiles TRIAD supradomain profile. 88 295 IPR044066 -
Vifa4g01179 295 FunFam RBR-type E3 ubiquitin transferase 87 173 - -
Vifa4g01179 295 Pfam IBR domain, a half RING-finger domain 242 290 IPR002867 GO:0008270
Vifa4g01179 295 Pfam IBR domain, a half RING-finger domain 161 222 IPR002867 GO:0008270
Vifa4g01179 295 SUPERFAMILY RING/U-box 172 226 - -
Vifa4g01179 295 SUPERFAMILY RING/U-box 89 169 - -
Vifa4g01179 295 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 284 IPR031127 GO:0004842|GO:0016567
Vifa4g01179 295 Pfam RING-type zinc-finger 92 137 IPR027370 -
Vifa4g01179 295 CDD Rcat_RBR_unk 248 284 - -
Vifa4g01179 295 SMART ibrneu5 160 222 IPR002867 GO:0008270
Vifa4g01179 295 SMART ibrneu5 232 292 IPR002867 GO:0008270
Vifa4g01179 295 SUPERFAMILY RING/U-box 233 293 - -
Vifa4g01179 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 174 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01179 Vifa-Chr4 354260747 354261733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01179 92 281 C3H Transcription Factor Family AT2G19610 25.500 1.20e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01179 K11975 - gmx:100815626 342.428