Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g01178 | ATGGATTCTCAAGATATAGTTAGAAAGACAAATGATCAGCCTGAAGTCTCCTTGATGGTTGGTGAAAGTGCGAAATCGCTTAATCAAGCTTTTCTCAGTATCTGTGAGTCTTTTATCGCAAGTGAAGTCGTCGGTGGAGGATCCATGAGAATTGGCAAGTTCATTTCATTCATTCTATCTATTAGTAAACACTTCTTGAAGAAAAATATTTGTGAGATCGTCGAGGAAAATACATCCTCTACAATAGACGAAGACAAGTTTTATGATGCTGAAGAAATGTTTTCAATATATGATGATGACAAGGATGTTGTAGAAATCCAAGTAGTGGACAGTGAGGATAATACACTCTTGAGAAACCTAAAACAAAAATATAAGGAGACTATTGAAGACAAATATTCTACTCAATTGAAACAATCATATTGTTCTATTTGTATGGAAGCTAAACCAGTTATAGAAATGTTCAAAAATCAAAATTGTTCACACTCTTTCTGTGAGGATTGTATTGGAAGATATCTAACTACAAAAATTCAAGACAATATATCATGGGTAAACTGTCCTGAACCAAGCTGCAAAGGAACTTTAGAGGCTTATCATTGTATTTCAATTATACCAAAGGATGTGTTTGATAGATGGGAAAATACACTTTGTGAGAGTTCGGTCTTAGAATCACAAAAATTTTATTGCCCTTTTAAGGATTGTTCAGCTATGTTGGTGAATGATGCAGAGGAAATTGTGACGGTTTCAGAATGTCCACATTGTCATCGATTGTTCTGCGCACAATGTAGGGTTTCATGGCATGCGGGAGTTGATTGTAGAGAGTTTCATAGTTTGATAAACAGTGAGCAAGGAAGGGAAGATTTATTGACGATGAAACTTGCAAAGAAAAAGAATTGGAAAAGATGTCCAAAATGCAACTACTATGTTGAAAAAGTTCATGGATGTACTCACATTATTTGCAGATGTCGTCATCAATTTTGTTATGGATGTGGAGGCACTTGGACGGGAGGATCCCATTATAAGTGTAAAGCTCGAAAGAAAATTGCACTATGCCCTTGTTTGATTTGA | 1065 | 0.3549 | MDSQDIVRKTNDQPEVSLMVGESAKSLNQAFLSICESFIASEVVGGGSMRIGKFISFILSISKHFLKKNICEIVEENTSSTIDEDKFYDAEEMFSIYDDDKDVVEIQVVDSEDNTLLRNLKQKYKETIEDKYSTQLKQSYCSICMEAKPVIEMFKNQNCSHSFCEDCIGRYLTTKIQDNISWVNCPEPSCKGTLEAYHCISIIPKDVFDRWENTLCESSVLESQKFYCPFKDCSAMLVNDAEEIVTVSECPHCHRLFCAQCRVSWHAGVDCREFHSLINSEQGREDLLTMKLAKKKNWKRCPKCNYYVEKVHGCTHIICRCRHQFCYGCGGTWTGGSHYKCKARKKIALCPCLI | 354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g01178 | 354 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 186 | IPR001841 | - | |
| Vifa4g01178 | 354 | CDD | Rcat_RBR_unk | 297 | 333 | - | - | |
| Vifa4g01178 | 354 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 103 | 340 | IPR031127 | GO:0004842|GO:0016567 | |
| Vifa4g01178 | 354 | CDD | BRcat_RBR_unk | 222 | 274 | - | - | |
| Vifa4g01178 | 354 | ProSitePatterns | Zinc finger RING-type signature. | 159 | 168 | IPR017907 | - | |
| Vifa4g01178 | 354 | SUPERFAMILY | RING/U-box | 221 | 274 | - | - | |
| Vifa4g01178 | 354 | SUPERFAMILY | RING/U-box | 138 | 218 | - | - | |
| Vifa4g01178 | 354 | ProSiteProfiles | TRIAD supradomain profile. | 137 | 345 | IPR044066 | - | |
| Vifa4g01178 | 354 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 222 | IPR013083 | - | |
| Vifa4g01178 | 354 | SUPERFAMILY | RING/U-box | 284 | 344 | - | - | |
| Vifa4g01178 | 354 | FunFam | RBR-type E3 ubiquitin transferase | 136 | 222 | - | - | |
| Vifa4g01178 | 354 | Gene3D | - | 268 | 348 | - | - | |
| Vifa4g01178 | 354 | SMART | ring_2 | 301 | 353 | IPR001841 | - | |
| Vifa4g01178 | 354 | SMART | ring_2 | 141 | 190 | IPR001841 | - | |
| Vifa4g01178 | 354 | Pfam | IBR domain, a half RING-finger domain | 291 | 340 | IPR002867 | GO:0008270 | |
| Vifa4g01178 | 354 | Pfam | IBR domain, a half RING-finger domain | 210 | 271 | IPR002867 | GO:0008270 | |
| Vifa4g01178 | 354 | SMART | ibrneu5 | 285 | 341 | IPR002867 | GO:0008270 | |
| Vifa4g01178 | 354 | SMART | ibrneu5 | 209 | 271 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g01178 | Vifa-Chr4 | 353543936 | 353550396 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g01178 | 113 | 341 | C3H Transcription Factor Family | AT2G31760 | 30.769 | 1.92e-19 | 87.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g01178 | K11975 | - | gmx:100815626 | 346.665 |