Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01177 ATGAATTCTTCTTCTGGAAACAACACATCAAGAAAACCCAAAATCAAGAAAGTAGAAAAATCAGATATGTGTCGTGTGGCTTTCTCAAAACACAAACTAGGGCTTTTCAACAAGGTCACTGAGCTATCGATACTATGCAAAGCAAAAACTGCAATGATTATCACTTCACCAAACGAAAAAATATATGCATGTGGTTACCCTAATCCAGAAGCTGTCATTAATCACTTTATTGGCATGGAAAACCATGAGATCAACAATGAAATAAGGAGGCAAGATGAAGAAACAATTGAAATCTTGAGTCTTCAACAAAAGGAACTTTTAGAACAATTGCAACAAGAGAAGAAGAATTTACAAGATGCAATAGAGGCAAAAGACAAGAGTTCTAATTTTCCTAATTGGTGGGATTATTCTATTGATGACATGAGTTTGGAATCCCTTGAGGAATATAAGGCTTCTTTAGAAAATTTGAAACTTAATTTAGTTTCATCTTTGGAAGGGAAGTAA 504 0.3393 MNSSSGNNTSRKPKIKKVEKSDMCRVAFSKHKLGLFNKVTELSILCKAKTAMIITSPNEKIYACGYPNPEAVINHFIGMENHEINNEIRRQDEETIEILSLQQKELLEQLQQEKKNLQDAIEAKDKSSNFPNWWDYSIDDMSLESLEEYKASLENLKLNLVSSLEGK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01177 167 Gene3D - 22 129 IPR036879 GO:0003677|GO:0046983
Vifa4g01177 167 PANTHER MADS BOX PROTEIN 11 160 - -
Vifa4g01177 167 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Vifa4g01177 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 63 IPR002100 GO:0003677|GO:0046983
Vifa4g01177 167 Coils Coil 96 127 - -
Vifa4g01177 167 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa4g01177 167 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa4g01177 167 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa4g01177 167 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa4g01177 167 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01177 Vifa-Chr4 353465154 353465657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01177 17 157 Type I MADS-box Gene Family AT5G60440 34.459 1.22e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa4g01177 SRF-TF 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01177 - - psat:127076209 236.884