Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01176 ATGTTGCAGTTTCATCCTCAAGGAGCTTCTAAACAGACCTGTACTGTTCTTGCTGTTACTTCTGATACACATTCTGTTGAGCAGAAGCAGAAGCATCCACTGAATCATAGAAAATATCCTTTCCCGGAGTTGGTTTCTTCGGGGCGTCTAGAGGTGCAAACTCTCTGCAATCCGGAAAAGGAACAATTTCGTAAAGTTCTTGAAACGTATCAGCCGAGTTTTGTTTACTTACAAGGAGAGAAGTTAGTGAACGAGGAAGTTGGTCCATTGGTTTGGCAAGGTGTGGAATTATCCACTCCTGAAGATGTATCAGAGCTCTTTGGTACCACATTGCCGACGGTTGTATATTTAGAAATCCCAAATGGAGAAAGTTTTGCTGAGGCCCTTCATCTTAAGGGAATATTAGCTGATTCAGCTTGTTTGACTACACAGGGGATCCCATATGTTGTATTTTGGAAGAATGCATTTTCTCGATATGTTGCTTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGTTCATGTACACATACATGGGATGCTTTCCACCTTGCACATGCTTCTTTCAAACTTTACTGTGTTCAAAATAACCAAGTACTTCCTACTGATAGCAATGATGCTGATAGCGATATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCGATGTTGACCCTCCAGAGATGGGTGAAGAAGAAGAAGACGATGATGATGAAGAAAGTTCCTCCGGCAGTCTTCCTTCTATACAGATTCATGATGATGAAATGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGACGAGTCATTGCTAAGATGTTTGGAGGATGGACTCAGAACTCTATTAACTATTGAAATACGCGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTTCAGGCAGCTTCTTTTTCACGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTGCTGCCCATATCTCACTTCTAGTATCTGGCAGTGCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTAACGCACAACTCAACAACGAAGCAAACAAACATATTATCTCTGAACCTCGCAAATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAATTACCATGAGGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGCTGCCTGTTGCTTCTTTTGAGAAAGATGATGCGGAGCGCTTACTTTTCTTCTATCAAAGCTCCGAGAAAGATGGATGTGCAAATGGAAATATAGTTTTCAGCAGGCCCCCCATTTGGTTGAAACCTCCCCCTCCTACAAGAAAGAGATGCGAATTAAACCAAGGGGCTAACCATGACAGGGTCTTTGCAGGGCAGGGTGCTGTTAAAAAAGTAGATGGAGAGGAAAAGGATAGGAAAATGGTGAATGGGATTAGTACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCGATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGATAGATAGTTTCGGTGGTGCCCATGTTGAAGCTAATGTGCCACTTGTCCCTATGAAGCGCAGTAGTGTTGGAACATCATCCACGGCCCATAGAAAATCATTTTCAAGCTCAGCTCATTCTAAGCAGGTTATTTCATTGAATCCTTTACCATTGAAGAAACACGGTTGTAGCAGAGGCCCAGTACAGACTTGCTCTGAGGATGAATTTATTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTAATTCCCCAAGGAGGGCTCTCTGAGTTTCCTGATGCCATTCTGAATGGAAAGCGCCTTGATCTCTACAACCTATATAAAGAGGTGGTCACAAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGGGAAATTACACATCAACCAATAGAATGACTGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACACGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGCGGCATATGTGGTGAGTGGGCTCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGTTGGAATATATATGTCCTCATTGTAGTATTACAAATTTCAAGAAAAAACAAGGTGTTGCTAATGGATATTCACAAGGGTCAATGTCATCAAGACCCCTTTGA 2388 0.4271 MLQFHPQGASKQTCTVLAVTSDTHSVEQKQKHPLNHRKYPFPELVSSGRLEVQTLCNPEKEQFRKVLETYQPSFVYLQGEKLVNEEVGPLVWQGVELSTPEDVSELFGTTLPTVVYLEIPNGESFAEALHLKGILADSACLTTQGIPYVVFWKNAFSRYVACHFRQAFFSVVQSSCTHTWDAFHLAHASFKLYCVQNNQVLPTDSNDADSDMGPHLLGDCLKIDVDPPEMGEEEEDDDDEESSSGSLPSIQIHDDEMNLRFLICGAPSTVDESLLRCLEDGLRTLLTIEIRGCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSAAHISLLVSGSAQACFNDQLLENHIKNEIIEKSQIVNAQLNNEANKHIISEPRKSASIACGATIFEITMRLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCANGNIVFSRPPIWLKPPPPTRKRCELNQGANHDRVFAGQGAVKKVDGEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFCGPSEIDSFGGAHVEANVPLVPMKRSSVGTSSTAHRKSFSSSAHSKQVISLNPLPLKKHGCSRGPVQTCSEDEFIKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQGVANGYSQGSMSSRPL 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01176 795 Gene3D - 606 712 IPR036431 GO:0003677
Vifa4g01176 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 775 IPR013083 -
Vifa4g01176 795 MobiDBLite consensus disorder prediction 228 243 - -
Vifa4g01176 795 SUPERFAMILY ARID-like 609 724 IPR036431 GO:0003677
Vifa4g01176 795 SUPERFAMILY FYVE/PHD zinc finger 712 779 IPR011011 -
Vifa4g01176 795 SMART ARID_2 606 709 - -
Vifa4g01176 795 MobiDBLite consensus disorder prediction 227 250 - -
Vifa4g01176 795 CDD PHD_ARID4_like 719 770 - -
Vifa4g01176 795 CDD ARID 611 709 - -
Vifa4g01176 795 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 792 IPR042293 -
Vifa4g01176 795 SMART bright_3 610 714 IPR001606 GO:0003677
Vifa4g01176 795 ProSiteProfiles ARID domain profile. 609 713 IPR001606 GO:0003677
Vifa4g01176 795 Pfam ARID/BRIGHT DNA binding domain 612 709 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01176 Vifa-Chr4 353198046 353216320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01176 4 784 ARID Transcription Factor Family AT3G43240 58.779 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa4g01176 ARID 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01176 - - gmx:100816540 1326.61