Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01175 ATGTTGCAGTTTCATCCTCAAGGAGCTTCTAAACAGACCTGTACTGTTCTTGCTGTTACTTCTGATACACATTCTGTTGAGCAGAAGCAGAAGCATCCACTGAATCATAGAAAATATCCTTTCCCGGAGTTGGTTTCTTCGGGGCGTCTAGAGGTGCAAACTCTCTGCAATCCGGAAAAGGAACAATTTCGTAAAGTTCTTGAAACGTATCAGCCGAGTTTTGTTTACTTACAAGGAGAGAAGTTAGTGAACGAGGAAGTTGGTCCATTGGTTTGGCAAGGTGTGGAATTATCCACTCCTGAAGATGTATCAGAGCTCTTTGGTACCACATTGCCGACGGTTGTATATTTAGAAATCCCAAATGGAGAAAGTTTTGCTGAGGCCCTTCATCTTAAGGGGATCCCATATGTTGTATTTTGGAAGAATGCATTTTCTCGATATGTTGCTTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGTTCATGTACACATACATGGGATGCTTTCCACCTTGCACATGCTTCTTTCAAACTTTACTGTGTTCAAAATAACCAAGTACTTCCTACTGATAGCAATGATGCTGATAGCGATATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCGATGTTGACCCTCCAGAGATGGGTGAAGAAGAAGAAGACGATGATGATGAAGAAAGTTCCTCCGGCAGTCTTCCTTCTATACAGATTCATGATGATGAAATGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGACGAGTCATTGCTAAGATGTTTGGAGGATGGACTCAGAACTCTATTAACTATTGAAATACGCGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTTCAGGCAGCTTCTTTTTCACGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTGCTGCCCATATCTCACTTCTAGTATCTGGCAGTGCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTAACGCACAACTCAACAACGAAGCAAACAAACATATTATCTCTGAACCTCGCAAATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAATTACCATGAGGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGCTGCCTGTTGCTTCTTTTGAGAAAGATGATGCGGAGCGCTTACTTTTCTTCTATCAAAGCTCCGAGAAAGATGGATGTGCAAATGGAAATATAGTTTTCAGCAGGCCCCCCATTTGGTTGAAACCTCCCCCTCCTACAAGAAAGAGATGCGAATTAAACCAAGGGGCTAACCATGACAGGGTCTTTGCAGGGCAGGGTGCTGTTAAAAAAGTAGATGGAGAGGAAAAGGATAGGAAAATGGTGAATGGGATTAGTACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCGATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGATAGATAGTTTCGGTGGTGCCCATGTTGAAGCTAATGTGCCACTTGTCCCTATGAAGCGCAGTAGTGTTGGAACATCATCCACGGCCCATAGAAAATCATTTTCAAGCTCAGCTCATTCTAAGCAGGTTATTTCATTGAATCCTTTACCATTGAAGAAACACGGTTGTAGCAGAGGCCCAGTACAGACTTGCTCTGAGGATGAATTTATTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTAATTCCCCAAGGAGGGCTCTCTGAGTTTCCTGATGCCATTCTGAATGGAAAGCGCCTTGATCTCTACAACCTATATAAAGAGGTGGTCACAAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGGGAAATTACACATCAACCAATAGAATGACTGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACACGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGCGGCATATGTGGTGAGTGGGCTCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGTTGGAATATATATGTCCTCATTGTAGTATTACAAATTTCAAGAAAAAACAAGGTGTTGCTAATGGATATTCACAAGGGTCAATGTCATCAAGACCCCTTTGA 2352 0.4277 MLQFHPQGASKQTCTVLAVTSDTHSVEQKQKHPLNHRKYPFPELVSSGRLEVQTLCNPEKEQFRKVLETYQPSFVYLQGEKLVNEEVGPLVWQGVELSTPEDVSELFGTTLPTVVYLEIPNGESFAEALHLKGIPYVVFWKNAFSRYVACHFRQAFFSVVQSSCTHTWDAFHLAHASFKLYCVQNNQVLPTDSNDADSDMGPHLLGDCLKIDVDPPEMGEEEEDDDDEESSSGSLPSIQIHDDEMNLRFLICGAPSTVDESLLRCLEDGLRTLLTIEIRGCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSAAHISLLVSGSAQACFNDQLLENHIKNEIIEKSQIVNAQLNNEANKHIISEPRKSASIACGATIFEITMRLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCANGNIVFSRPPIWLKPPPPTRKRCELNQGANHDRVFAGQGAVKKVDGEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFCGPSEIDSFGGAHVEANVPLVPMKRSSVGTSSTAHRKSFSSSAHSKQVISLNPLPLKKHGCSRGPVQTCSEDEFIKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQGVANGYSQGSMSSRPL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01175 783 MobiDBLite consensus disorder prediction 216 231 - -
Vifa4g01175 783 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Vifa4g01175 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 763 IPR013083 -
Vifa4g01175 783 SUPERFAMILY FYVE/PHD zinc finger 700 767 IPR011011 -
Vifa4g01175 783 Gene3D - 594 700 IPR036431 GO:0003677
Vifa4g01175 783 SMART ARID_2 594 697 - -
Vifa4g01175 783 MobiDBLite consensus disorder prediction 215 238 - -
Vifa4g01175 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 780 IPR042293 -
Vifa4g01175 783 CDD PHD_ARID4_like 707 758 - -
Vifa4g01175 783 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Vifa4g01175 783 CDD ARID 599 697 - -
Vifa4g01175 783 SMART bright_3 598 702 IPR001606 GO:0003677
Vifa4g01175 783 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01175 Vifa-Chr4 353198046 353216320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01175 4 772 ARID Transcription Factor Family AT3G43240 59.819 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa4g01175 ARID 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01175 - - gmx:100816540 1335.47