Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01165 ATGGATACTATCAAGTCCTTCAAAGGTTACGGCAAAGTAGACGAACTCGAACAACAAGCATTCAAAAAAAAGACACGTAAGCGCATCACTATCATAATCATCTCCTCCCTCATTCTAATCGCAGTCATCGTAGCCGCGGTCGCAGGAATCCTCATACACAAGCGCAACACCTCATCAAACCCCTCCTCCAACTCTCTCCCTAACACCGATTTAAACCCTGCCACGTCACTCAAATCGGTTTGCGACGCGACTCAGTATCCCCACTCCTGCATAGCCGCAATCTCCTCCCTCCCGGAATCCAACACCACCGATCCAGAGAAACTGTTCAAACTCTCTCTTAAAGTCGCAATGGATGAACTCTCAAACCTCACGCGCTTAAAGCTCAAAGCGAGTGGAGACACGCGCCTTGAGAAAGCTATAGCAGTTTGCAGCTCCGTTCTTGAGGACTCGCTGGATCGGCTGAATGATTCAATGTCGATGATAATCGCCGATGATAAGATTCTCTCGCCGGCGAAGGTTCGTGACGTTGAGACTTGGATCACCGCTGCATTAACAGATCACGATACATGTTTAGACGCTGTTGGTGAAGTAAACTCCCCCGCCGCGCGTGGTGTTTTAACACAAATTGAAACAGCCATGAGAAACTCTACCGAGTTTGCCAGCAACAGTTTAGCGATCGTATCGAAGGTTATAAGATTATTATCAAATTTCGAGATTCCGAGCCACCACCGGAGGTTGTTAGAGTTTCCGGAGTGGTTAGGAACGGCTGAGAGAAGGCTTCTGGCGGATTCGGTGAACATGACGGTGGATGCGGTGGTGGCGAAGGATGGTTCTGGCCAGTATACGACGATAGGGGAGGCGTTGACGAATGTGAAGAAGAAGAGCGATGTGAGATTCGTCGTGTATGTGAAGAAAGGGATATACGTAGAGAATATCGATTTGGATAAGAATACGTGGAATGTGATGATCTACGGTGATGGTATGACGGAAACCATCGTCAGCGGTAGCCGGAATTTCATCGACGGCACACCGACCTTTGAAACTGCCACGTTCGCTGTTAAGGGCAAGGGATTCATTGCCAAGGACATACAATTCGTGAACACTGCAGGTGCATCTAAGCACCAAGCTGTGGCATTTCGATCTGGCTCAGATCAATCTGTGTTTTATAAGTGTTCATTTGTGGGATATCAGGACACCCTTTACGCGCATTCAAATCGTCAATTCTACCGGGAATGTGACATTACAGGTACCATAGACTTCATATTTGGAAATGCAGCTGTTGTGTTTCAGAATTGCAAAATCATGCCTAGGCAACCGCTATCAAATCAGTTCAACACCATAACAGCTCAGGGTAAGAAGGATCCAAATCAAAACTCTGGAATTGTGATCCAGAAATCAACTATCACACCTTATGACAATCTCGTAGCGCCAACTTATCTTGGTAGGCCATGGAAAGATTTCTCCACCACTCTTATCATGAAATCAGAAATTGGCTCATTCTTGAAACCAGTGGGGTGGATAAGTTGGGTTGCTAATGTGGAACCTCCAAGTAGCATCCTTTATGCTGAATACCAGAACACTGGGCCTGGAGCAGATGTAACCCAAAGAGTCAAGTGGGTCGGTTATAAACCCGCTATTGCAGACGAAGAAGCCTCGAAGTTCACAGTTGAGTCCTTTATACAGGGCTCTGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGAATCTACCTTGTGA 1734 0.4677 MDTIKSFKGYGKVDELEQQAFKKKTRKRITIIIISSLILIAVIVAAVAGILIHKRNTSSNPSSNSLPNTDLNPATSLKSVCDATQYPHSCIAAISSLPESNTTDPEKLFKLSLKVAMDELSNLTRLKLKASGDTRLEKAIAVCSSVLEDSLDRLNDSMSMIIADDKILSPAKVRDVETWITAALTDHDTCLDAVGEVNSPAARGVLTQIETAMRNSTEFASNSLAIVSKVIRLLSNFEIPSHHRRLLEFPEWLGTAERRLLADSVNMTVDAVVAKDGSGQYTTIGEALTNVKKKSDVRFVVYVKKGIYVENIDLDKNTWNVMIYGDGMTETIVSGSRNFIDGTPTFETATFAVKGKGFIAKDIQFVNTAGASKHQAVAFRSGSDQSVFYKCSFVGYQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQNCKIMPRQPLSNQFNTITAQGKKDPNQNSGIVIQKSTITPYDNLVAPTYLGRPWKDFSTTLIMKSEIGSFLKPVGWISWVANVEPPSSILYAEYQNTGPGADVTQRVKWVGYKPAIADEEASKFTVESFIQGSEWLPNAAVQFESTL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01165 577 FunFam Pectinesterase 264 577 - -
Vifa4g01165 577 CDD PMEI-like_3 79 229 - -
Vifa4g01165 577 FunFam Pectinesterase 73 231 - -
Vifa4g01165 577 Pfam Pectinesterase 270 562 IPR000070 GO:0030599|GO:0042545
Vifa4g01165 577 SUPERFAMILY Pectin lyase-like 269 574 IPR011050 -
Vifa4g01165 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 230 IPR035513 -
Vifa4g01165 577 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Vifa4g01165 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 230 IPR035513 -
Vifa4g01165 577 Gene3D - 264 577 IPR012334 -
Vifa4g01165 577 PANTHER PECTINESTERASE 36 567 - -
Vifa4g01165 577 SMART PMEI_2 72 226 IPR006501 GO:0004857
Vifa4g01165 577 NCBIfam pectinesterase inhibitor domain 61 229 IPR006501 GO:0004857
Vifa4g01165 577 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Vifa4g01165 577 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01165 Vifa-Chr4 351043001 351046135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01165 1 571 Carbohydrate Esterase AT1G53840 58.234 0.0 691