Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01160 ATGTGTGAGACTTCACTCACCTGTGCTCAAGAACAGTTGCTTCCATTAATAAAGGAAGCAGTCAACATGATTAGGGGTGTCCCTAAAGAAATTGCTGAAATGCAAGATGAACTTGAACGCATTGAAGACTTCATCTACGAAGCAGATAGAATGGCTGATTCACAGAAAGACAATACTAAGCACGAAATCAAAGCAATTATCAAACAGTTGAAAAAAAATCTCGCGATCTTAGCTATATTTCTCTTATGTATGTTTTGCATATGTATGGTTCGTTTAATTCTTGATTTACATCGGCAACATGCTTTTGTTCCTCTTGAAAAATCAATTCTGAAGTCTTTGCCCATTAGGGTTTTCAAACCAGAAGAATTCAAAGATGGTTTGAAATGTGTTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAGTTAGAGTTTTACCAGAATGCAATCATGGATTTCATTTAGATTGTATTGATAAGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTAATGAATCCTCTATACCTAATAGTGCTACAAATGCTCAAGAGATCAATGTGTCAATATGTTAG 588 0.3469 MCETSLTCAQEQLLPLIKEAVNMIRGVPKEIAEMQDELERIEDFIYEADRMADSQKDNTKHEIKAIIKQLKKNLAILAIFLLCMFCICMVRLILDLHRQHAFVPLEKSILKSLPIRVFKPEEFKDGLKCVVCLCDVVEGEKVRVLPECNHGFHLDCIDKWFQSHSTCPLCRNLVSNESSIPNSATNAQEINVSIC 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01160 195 Pfam Ring finger domain 128 171 IPR001841 -
Vifa4g01160 195 Gene3D - 6 76 - -
Vifa4g01160 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 176 IPR013083 -
Vifa4g01160 195 Pfam Rx N-terminal domain 9 72 IPR041118 -
Vifa4g01160 195 CDD RING-H2_EL5-like 129 171 - -
Vifa4g01160 195 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vifa4g01160 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 55 182 - -
Vifa4g01160 195 SMART ring_2 129 170 IPR001841 -
Vifa4g01160 195 SUPERFAMILY RING/U-box 109 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01160 Vifa-Chr4 350490528 350493199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01160 105 175 C3H Transcription Factor Family AT1G53820 67.606 3.47e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01160 - - nnu:104609244 135.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01160 4 350490528 350493199 Vifa4g01160 4 350490528 350493199 ECH