Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01159 ATGGATATTCTCTTGCAACGGTTCTTAGAAAATCTCGCGATCTTAGCTATATTTCTCTTATGTATGTTTTGCATATGTATGGTTCGTTTAATTCTTGATTTACATCGGCAACATGCTTTTGTTCCTCTTGAAAAATCAATTCTGAAGTCTTTGCCCATTAGGGTTTTCAAACCAGAAGAATTCAAAGATGGTTTGAAATGTGTTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAGTTAGAGTTTTACCAGAATGCAATCATGGATTTCATTTAGATTGTATTGATAAGTGGTTTCAATCTCACTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTAATGAATCCTCTATACCTAATAGTACTACAAATGCTCAAGAGATCAATGTGTCAATATGTTAG 402 0.3308 MDILLQRFLENLAILAIFLLCMFCICMVRLILDLHRQHAFVPLEKSILKSLPIRVFKPEEFKDGLKCVVCLCDVVEGEKVRVLPECNHGFHLDCIDKWFQSHSTCPLCRNLVSNESSIPNSTTNAQEINVSIC 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01159 133 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Vifa4g01159 133 SMART ring_2 67 108 IPR001841 -
Vifa4g01159 133 SUPERFAMILY RING/U-box 47 115 - -
Vifa4g01159 133 PANTHER RING-H2 FINGER PROTEIN ATL16 43 125 IPR044600 GO:0016567|GO:0016740
Vifa4g01159 133 CDD RING-H2_EL5-like 67 109 - -
Vifa4g01159 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 114 IPR013083 -
Vifa4g01159 133 Pfam Ring finger domain 66 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01159 Vifa-Chr4 350473617 350474139 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01159 43 127 C3H Transcription Factor Family AT1G53820 60.000 1.74e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01159 - - cam:101491184 135.576