Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01157 ATGGGTGCAACTGTAACTGCAACAGCATCACCAGGGTCAAGTGACAGATTGACTGATTCTGATCCAATTGAACTAACAGGAAAAATCATGGTGGTAGCTATAATTTTCCTGTTTGTAGTTGTTATGTTTGTTCTAATGCTTCACTTATATGCTAAGTGGTTCTGGTGGCGTTTTGAGGAGAGAACAGCTCCTCAACCAAGAAACCTCCGTCGCAGACGGCGGTTTCAGTTTGCTCCAGGTCAAGATCCTGTCATCTATGGTAGTGGAACTCACCAAATTGGACTTGAAGCTTCAATTCTTAAGTCTTTGCCTGTTTTGGTTTTCAAACCAGAAGAATTCAAAGATGGTTTGGAATGTGCTGTTTGTCTTTGTGATATTGTTGAAGGAGAAAAAGCTAGACTTTTACCAAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAGTCTCATTCCACTTGTCCTCTTTGTAGGAATTTAGTTTCTAATGAATCCTCTATACCTAATAGTACTTCAAATGCTGAAGAGATCAATGTGTTCGTTTCATCAGAAGGTGAAAATTTGAGTCCTATGAATGGTTTAGAGTCTTCAAATTTTCCAACAAATGTTTTGGTATTTGGTAATTGCCAAACCCAAACCCAAACACAAACACAAGGTAGTTCTTTTGGTGTTTCTTTGGAAGAAGGAAGTTCTCAACAACAAGAACAACCTTGTTCAACATCATCATCTTCTTTAGCTAGTGATAATACAATGTTGGTGATTGATATACCATTATCAAGTGAGTTTGGTTCTTTGTCTTTGTCATCTTCTGATATTAGGTGTGTTGAAGTTGAAGATGAGATGAAATCACCAATGTCAACAAGATTGAGGTCATTTAAGAGGCTTTTAAGTAGGGACAAGAAGTTAAGTCCTTGTATTCCAGGTTCTTTGGATGTTGAACAAGGCCAGAGCTAG 963 0.3769 MGATVTATASPGSSDRLTDSDPIELTGKIMVVAIIFLFVVVMFVLMLHLYAKWFWWRFEERTAPQPRNLRRRRRFQFAPGQDPVIYGSGTHQIGLEASILKSLPVLVFKPEEFKDGLECAVCLCDIVEGEKARLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSNESSIPNSTSNAEEINVFVSSEGENLSPMNGLESSNFPTNVLVFGNCQTQTQTQTQGSSFGVSLEEGSSQQQEQPCSTSSSSLASDNTMLVIDIPLSSEFGSLSLSSSDIRCVEVEDEMKSPMSTRLRSFKRLLSRDKKLSPCIPGSLDVEQGQS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01157 320 CDD RING-H2_EL5-like 118 161 - -
Vifa4g01157 320 SMART ring_2 119 160 IPR001841 -
Vifa4g01157 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Vifa4g01157 320 Pfam Ring finger domain 118 161 IPR001841 -
Vifa4g01157 320 MobiDBLite consensus disorder prediction 220 247 - -
Vifa4g01157 320 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vifa4g01157 320 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 166 IPR044675 -
Vifa4g01157 320 FunFam RING-H2 finger protein ATL3 87 166 - -
Vifa4g01157 320 SUPERFAMILY RING/U-box 99 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01157 Vifa-Chr4 349810662 349811624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01157 24 303 C3H Transcription Factor Family AT1G53820 42.258 5.72e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01157 - - cam:101491184 352.443