Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01151 ATGTCGGCGGATCCATGGTTGATGCTGATGCTGGTTTTCATCAGTATCTGTACACTTGTTGTCAATGGTGACACAGATCCAAATGATGCCTCTTCTTTAATGGGTTTATATCAAAGTATGAACTCACCGCCGCAGCTAAATTGGCCGGTTAATGGCAACAACAACAACGATCCTTGTGGACAGTCATGGACAGGCATCACTTGCTCAGGCAACCGAATCACAGAAATTAAGTTACCTGGTCATGGACTAACCGGAACTTTGGCTTACCAGATACAAAGCTTTTCAGCTCTTACAAACCTAGACATGAGTAACAACAATCTCGGTGGCACATTACCGTACCAGTTTCCTCAAAATTTGCAGCACTTAAATCTTGCTAATAATAATTTCAACGGCGGGATACCTTATTCTTTTTCCGATTTTGCTTCTCTTATAACCCTGAATCTCGGTCACAATCAATTCCAACAAGAACTAAGTGTGAACTTTCAAAAGCTTACTTCCCTTTCTACATTGGATGTTTCTTTCAATTCTTTGACTGGAAACCTTCCTCAGACGATGAACTCCCTTTCAAGCATAAACACCATGTATCTACAAAATAATCAATTTTCGGGAACCATTGATGTCCTTGCTGATCTGCCTCTTGATAATTTGAATGTGGAAAACAATCATTTTACAGGATGGATACCAGAGCAGTTGAAAAACATAAACCTACAAAAGAGTGGTAATTCATGGAGCTCTGGACCTGCACCCCCACCTCCTCCTGGTACACCTCCATTACCAAAAGACAAAGGTAGTCATCACAATTCTGGCGGACATAACAGCCCGTCAAATTCTGGCTCAAGTGAAGGAAGCAAAAAATCAGGTATAGGAGCTGGTGCCATTGCCGGAATAGTGATCTCTATCATAGTCGTTGGGGCAATACTAGCATTCTTTCTGTTGAAGAAAAGATCGAAGAAGAAGAAGTCGTACCCCGATGTGGAAAAGCTAGACAATCAGCCCTTGGCTCCTTCAAATGAAGTTCATGGAATGAACTCAATGCAAACTTCTTCTGTAATTGACTTGAAGACATTTGATACTTCTGCGGCTTCAATAAGCCTTAAACCACCTCCTAAATCATTTGATGAAGACGAGTTTCCAAAGAAGCTCACTGTAGTCAAGAAGACCGTAGCACCTCCTGCAAATTTGAAATCATATTCAATAGCTGACCTCCAGATTGCTACTGGAAGCTTCAGCGTGGATCATCTTCTTGGCGAGGGGTCTTTTGGGCGTGTATACCGTGCTCAATTTGATGATGGAAAGATTCTTGCCGTGAAGAAGATAGATTCATCAGTCCTTCCCAATGATATGTCTGATGATTTCATGGAAATAGTTTCAAAACTCTCCCGTTTGCATCATCCTAATGTGACAGAGCTTGAAGGTTATTGTTCTGAGCATGGACAACATCTCTTAGTCTATGAGTTTCACAAAAATGGATCCCTGCACGACTTCCTTCACCTCCCTGATGATTATGTTAAACCATTGATATGGAATTCACGTGTCAAAATTGCTTTGGGAATTGCACGCGCTTTAGAGTACCTACACGAAGTTTGTTCACCGTCAGTTGTTCATAAGAATATAAAGGCAGCCAACATATTGCTTGATGCTGATCTTAATCCGCATCTATCAGACAGTGGATTGGCCAGCTATATTCCAAACGCAAACCAGGTATTGAACAATAATGCTGGATCCGGAAACGATGCTCCTGAAGTCGGATTGTCTGGTCAGTATACTCTTAAGAGTGACGTCTACAGCTTTGGAGTCATCATGTTGGAGCTTTTAAGCGGACGCAAACCATTTGATAGCTCAAGGTCGAGGTTTGAACAGTCGTTAGTTCGATGGGCGACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCACTAGAAGGACTCTACCCTGTCAAGTCTCTTTCTCGATTCGCCGATGTCATTGCACTTTGTGTTCAGCCGGAACCTGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCATTGGTTCGGTTAGTGCAGCGAACGAACATGAGCAAACGGACATTTGGAACTGATCAAGGAGGGCCCAACCGTGATGATCAAGAAATCCTAGACATGTAA 2139 0.425 MSADPWLMLMLVFISICTLVVNGDTDPNDASSLMGLYQSMNSPPQLNWPVNGNNNNDPCGQSWTGITCSGNRITEIKLPGHGLTGTLAYQIQSFSALTNLDMSNNNLGGTLPYQFPQNLQHLNLANNNFNGGIPYSFSDFASLITLNLGHNQFQQELSVNFQKLTSLSTLDVSFNSLTGNLPQTMNSLSSINTMYLQNNQFSGTIDVLADLPLDNLNVENNHFTGWIPEQLKNINLQKSGNSWSSGPAPPPPPGTPPLPKDKGSHHNSGGHNSPSNSGSSEGSKKSGIGAGAIAGIVISIIVVGAILAFFLLKKRSKKKKSYPDVEKLDNQPLAPSNEVHGMNSMQTSSVIDLKTFDTSAASISLKPPPKSFDEDEFPKKLTVVKKTVAPPANLKSYSIADLQIATGSFSVDHLLGEGSFGRVYRAQFDDGKILAVKKIDSSVLPNDMSDDFMEIVSKLSRLHHPNVTELEGYCSEHGQHLLVYEFHKNGSLHDFLHLPDDYVKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKAANILLDADLNPHLSDSGLASYIPNANQVLNNNAGSGNDAPEVGLSGQYTLKSDVYSFGVIMLELLSGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGGPNRDDQEILDM 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01151 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 254 - -
Vifa4g01151 712 MobiDBLite consensus disorder prediction 692 712 - -
Vifa4g01151 712 MobiDBLite consensus disorder prediction 268 284 - -
Vifa4g01151 712 Gene3D Transferase(Phosphotransferase) domain 1 488 700 - -
Vifa4g01151 712 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Vifa4g01151 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Vifa4g01151 712 MobiDBLite consensus disorder prediction 321 341 - -
Vifa4g01151 712 MobiDBLite consensus disorder prediction 245 259 - -
Vifa4g01151 712 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Vifa4g01151 712 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01151 712 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Vifa4g01151 712 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 486 - -
Vifa4g01151 712 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Vifa4g01151 712 Gene3D Ribonuclease Inhibitor 26 252 IPR032675 -
Vifa4g01151 712 MobiDBLite consensus disorder prediction 237 286 - -
Vifa4g01151 712 Pfam Leucine rich repeat 96 153 IPR001611 GO:0005515
Vifa4g01151 712 PRINTS Leucine-rich repeat signature 164 177 - -
Vifa4g01151 712 PRINTS Leucine-rich repeat signature 97 110 - -
Vifa4g01151 712 SUPERFAMILY L domain-like 32 233 - -
Vifa4g01151 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 686 IPR046959 -
Vifa4g01151 712 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01151 Vifa-Chr4 349285693 349289835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01151 6 698 Strubbelig Receptor Gene Family AT1G53730 65.162 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa4g01151 PK_Tyr_Ser-Thr 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01151 - - gmx:100780323 1027.7