Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01145 ATGAGATCACAACCACCCTCTAAGTCTAACCCTTCCAACACTTACATAGTTTTCTCCAAACTAATGGTCTCAATCATAACAACAACCTTATTTCTAACCTTGTTCCTTGTTCATGTCTCTTCCTCTTGTAACCAATTTGACAAAGATTCACTCTTGTCTTTCTCTTCAAATATCTCAACTTTATCACCTCACCCACCTCTTAACTGGTCTTTTACCTCTGATTGTTGTGATTGGGAAGGTGTAACCTGTGATCAAAATAATCAACATGTTACTCATCTTTTGTTACCCTCTAGAGGTCTCAATGGTTTCATTTCACTTTCTACTTTCACTTCTCTTCAATCTCTTTCTCATCTTAATCTCTCTCATAATAAACTTCATGGTAATCTTCAAAATCTGTTTTTTTCCATTCTTAACCATCTTTTACTTCTTGATTTGAGTTACAATCGTTTCTCTGGTGAATTGCCACTTTGGAATGGAACCAGAAATAGCAGTGTTGTTGTTCAGGTGTTTGATTTGTCTAGTAATTCATTCAATGGAACATTGCCTGTTTCTCTGATTCGGAATCTTGCTGAAGGAGTTTTGGAGCTTTACTCCAATCAGTTGACAGGTTCTATTCCTAAGGATATTGGTAAGCTTTTGAAATTGGAAAAATTGCTTCTTCATGTCAACAATTTGACTGGTACGATTCCGCCGTCTTTGATGAATTGTAACAATCTCGTTGTGTTGAATTTGAGGGTTAATAGATTGGAAGGAAATCTATCGGCATTCAATTTCTCCGGATTGGTCAGGCTTGCTACGCTTGATCTTGGTAACAATAGGTTTACTGGTGTGTTACCGCCGACTCTTTATGATTGTAAGTCGCTTGCTGCATTGAGGCTTGCGTCTAATCAGATTGAGGGACAGGTTTCGTTTGAGATACTTGGACTCGAGTCTCTCTCGTTCTTGTCGATTTCTGATAACAAGCTGAAGAATATCACTGGTGCTCTTAGAATACTCACTGGTCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTACTATGAAGTGATGCCGAACATGATAGAACCTGATGGATTCCGAAATATCCAAGTTTTAGGATTAGGTGGCTGTAATTTCACAGGTCAAATACCGAGTTGGATTAAAAACCTGATGAAACTCGAGGCCTTGGATCTTTCGTTTAATCAATTCAATGGTTCGATACCTCCTTGGTTAGGTAAACTACCTCAGCTTTTCTACATAGATTTGTCTTTTAACCTACTTACTGGCCTGTTTCCGATAGAGCTCACGAAACTCCCGGCACTTACATCACAACAAGCAAATGATGAAGTAGAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCAAACAATGTTTCTTTGTTGCAATACAATCAACTTTCAAGCCTACCACCGGCAATATATCTTGGAAACAATCGCCTTAGTGGCAGTATCCCCGTCGAGGTTGGTCAACTGAAAGTCCTTCTTCAGCTGGACCTGAAGAAAAACAACTTCTCTGGCAATATACCGGATCAAATTTCAAACTTGATTAACTTAGAGAAACTAGACCTCTCAGAAAACGAACTATCCGGCGAAATTCCTGATTCCCTCAATAAATTGCATTTCTTGTCTTTTTTCAGTGTAGCACACAATAATCTGCAAGGACGGATACCAACGGGTAGTCAGTTTGATACTTTTTCCAACACCAGCTTTGAAGGAAACTCTCAATTGTGCGGTCTCGTTATTCAACGCCCTTGTTCTCCTCAACGAAATACTACCAGTACTTCAGCTAGAGCCAAATCCAAGAAAATAATAGTCATACTTATTATCGTAGTGTGTTTCGGCATAGCTACCTTGATTACGTTGTTGACACTGTGGATACTCTCTAAGAGGAGGGTCAATCCAAGAGGAGATTCTGATAAGATTGAGCTTGAATCGATTTCTCAGTACTCGAACAGCGGTGTTCATCCTGAGGTTGATAGGGAGGCTAGCCTAGTGGTATTGTTCCCCAGCAAAAACAATGAAACAAAGGATCTTTCAATATTAGAAATCATAAAAGCCACTGAAAATTTCAGTCAAGCAAATATAGTAGGATGTGGCGGTTTCGGTTTGGTTTATAAAGCGTCGTTTCAAAATGGAACTCAGCTAGCCATCAAGAAACTTTCAGGAGATTTAGGCCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAAGCTTTGTCAAACGCACAACATGAGAATCTGGTAGCATTACAAGGCTACTGCGTGCACGATGGTTATCGACTACTCATATATAATTACATGGAGAACGGAAGTCTCGATTACTGGTTGCATGAAAAGTCTGATGGTGCGTCTCAACTCGATTGGCCGACTCGTCTGAAGATTGCACAAGGAGCAGGTACATTAGGTTATATTCCTCCAGAGTATGGACAGGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGAGTTGTTTTGCTCGAGCTTCTCACCGGAAGGAGGCCTATGGATGTATGTAAGCCGAAAATTTCTAGGGAGTTGGTTAGCTGGGTTCAACAAATGAAAAACGAAGGAAAACAAGAACAAGTATTTGACTCGACTCTACGAGGGAAAGGATTTGAAGGCGAGATGCTGCAGGTACTCGATGTAGCATGCTTGTGTGTGAACATGAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTCGAATGGCTAAAAAATGTCCGAAGAAATAATGACTAG 2751 0.402 MRSQPPSKSNPSNTYIVFSKLMVSIITTTLFLTLFLVHVSSSCNQFDKDSLLSFSSNISTLSPHPPLNWSFTSDCCDWEGVTCDQNNQHVTHLLLPSRGLNGFISLSTFTSLQSLSHLNLSHNKLHGNLQNLFFSILNHLLLLDLSYNRFSGELPLWNGTRNSSVVVQVFDLSSNSFNGTLPVSLIRNLAEGVLELYSNQLTGSIPKDIGKLLKLEKLLLHVNNLTGTIPPSLMNCNNLVVLNLRVNRLEGNLSAFNFSGLVRLATLDLGNNRFTGVLPPTLYDCKSLAALRLASNQIEGQVSFEILGLESLSFLSISDNKLKNITGALRILTGLKKLSTLMLSKNFYYEVMPNMIEPDGFRNIQVLGLGGCNFTGQIPSWIKNLMKLEALDLSFNQFNGSIPPWLGKLPQLFYIDLSFNLLTGLFPIELTKLPALTSQQANDEVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGNNRLSGSIPVEVGQLKVLLQLDLKKNNFSGNIPDQISNLINLEKLDLSENELSGEIPDSLNKLHFLSFFSVAHNNLQGRIPTGSQFDTFSNTSFEGNSQLCGLVIQRPCSPQRNTTSTSARAKSKKIIVILIIVVCFGIATLITLLTLWILSKRRVNPRGDSDKIELESISQYSNSGVHPEVDREASLVVLFPSKNNETKDLSILEIIKATENFSQANIVGCGGFGLVYKASFQNGTQLAIKKLSGDLGLMEREFKAEVEALSNAQHENLVALQGYCVHDGYRLLIYNYMENGSLDYWLHEKSDGASQLDWPTRLKIAQGAGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPMDVCKPKISRELVSWVQQMKNEGKQEQVFDSTLRGKGFEGEMLQVLDVACLCVNMNPFKRPSIREVVEWLKNVRRNND 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01145 916 SUPERFAMILY Protein kinase-like (PK-like) 678 913 IPR011009 -
Vifa4g01145 916 SMART serkin_6 693 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01145 916 Gene3D Transferase(Phosphotransferase) domain 1 797 916 - -
Vifa4g01145 916 Gene3D Ribonuclease Inhibitor 254 327 IPR032675 -
Vifa4g01145 916 SUPERFAMILY L domain-like 69 438 - -
Vifa4g01145 916 SMART LRR_typ_2 385 409 IPR003591 -
Vifa4g01145 916 SMART LRR_typ_2 261 285 IPR003591 -
Vifa4g01145 916 SMART LRR_typ_2 212 236 IPR003591 -
Vifa4g01145 916 SMART LRR_typ_2 518 542 IPR003591 -
Vifa4g01145 916 SMART LRR_typ_2 112 135 IPR003591 -
Vifa4g01145 916 SMART LRR_typ_2 309 331 IPR003591 -
Vifa4g01145 916 ProSiteProfiles Leucine-rich repeat profile. 520 542 IPR001611 GO:0005515
Vifa4g01145 916 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 162 253 - -
Vifa4g01145 916 Pfam Leucine rich repeat N-terminal domain 47 84 IPR013210 -
Vifa4g01145 916 SUPERFAMILY L domain-like 361 580 - -
Vifa4g01145 916 Gene3D Ribonuclease Inhibitor 328 592 IPR032675 -
Vifa4g01145 916 ProSiteProfiles Protein kinase domain profile. 693 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01145 916 Gene3D Ribonuclease Inhibitor 46 166 IPR032675 -
Vifa4g01145 916 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 167 323 - -
Vifa4g01145 916 Gene3D Ribonuclease Inhibitor 167 253 IPR032675 -
Vifa4g01145 916 Pfam Protein tyrosine and serine/threonine kinase 802 907 IPR001245 GO:0004672|GO:0006468
Vifa4g01145 916 Pfam Protein tyrosine and serine/threonine kinase 697 790 IPR001245 GO:0004672|GO:0006468
Vifa4g01145 916 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Vifa4g01145 916 Gene3D Phosphorylase Kinase; domain 1 658 768 - -
Vifa4g01145 916 FunFam Tyrosine-sulfated glycopeptide receptor 1 258 593 - -
Vifa4g01145 916 Pfam Leucine rich repeat 238 298 IPR001611 GO:0005515
Vifa4g01145 916 Pfam Leucine rich repeat 362 422 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01145 Vifa-Chr4 348040285 348043508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01145 1 592 Miscellaneous Gene Families AT1G17240 44.872 6.12e-166 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa4g01145 PK_Tyr_Ser-Thr 9.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01145 - - gmx:100781943 956.822