Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01141 ATGGCTTCTGCTTGTGCTTCTTCTGCCATTGCAGCTGTTGCCATCTCTACTCCAAGTTCCCAGAAGAACGGATCACCCCTGGGAAGCTCAAAAGCTTTTCTTGGGAGGAAACTGAAGGTGAACAATAAGACTGCATCATCTTTTAGAGTAAGATCTACTACAACTGTGTGTACAGTTGCTGAGCCTGATAGACCTCTGTGGTTCCCTGGAAGCACCCCTCCTCCATGGCTTGATGGAAGTCTCCCAGGAGATTTTGGATTTGACCCTCTTGGTCTTGGATCTGATCCAGAGAGTCTGAGATGGAATGTTCAAGCCGAGCTTGTACACTGCAGATGGGCAATGTTAGGTGCAGCTGGAATTTTCATTCCAGAATTCCTAACAAAGATTGGTATCTTGAACACACCTTCATGGTACACTGCTGGTGAGCAAGAGTATTTCACAGACACAACCACACTCTTCATAGTCGAGCTTCTTTTCATCGGTTGGGCCGAGGGAAGAAGGTGGGCCGACATCCTCAATCCAGGTTGTGTCAACACTGACCCCATCTTTCCAAACAACAAGCTCACAGGAACTGATGTAGGGTACCCTGGTGGACTTTGGTTTGATCCACTTGGTTGGGGAAGTGCTTCTCCTCAGAAGCTTAAGGAGTTGAGAACTAAGGAAATTAAGAATGGAAGATTGGCTATGTTGGCTGTTATGGGTGCTTGGTTCCAGCACATTTACACCGGCACCGGTCCTATCGATAACCTCTTTGCTCACCTTGCTGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGA 810 0.4728 MASACASSAIAAVAISTPSSQKNGSPLGSSKAFLGRKLKVNNKTASSFRVRSTTTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELLFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01141 269 Pfam Chlorophyll A-B binding protein 73 239 IPR022796 -
Vifa4g01141 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 24 267 IPR001344 GO:0009765|GO:0016020
Vifa4g01141 269 FunFam Chlorophyll a-b binding protein, chloroplastic 74 259 - -
Vifa4g01141 269 Gene3D Chlorophyll a/b binding protein domain 74 259 - -
Vifa4g01141 269 SUPERFAMILY Chlorophyll a-b binding protein 60 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01141 Vifa-Chr4 346782522 346783948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01141 57 269 Chloroplast and Mitochondria Gene Families AT3G61470 90.610 1.77e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01141 K08908 - gmx:100784089 501.13