Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01133 ATGGAGTTGTTGCAAGAAGTGAAAGGCTATTCACAAGAAGAGGAAGAAGAAGAAGAAATCATAACAAGAACAACAAAAGAAGATGAAAACAGTAGAATCAATCATCATCATCACCATCACTCACCTGAGTCTCACAATTCATCTTCTGGAGGATTAGGGTTATTACACCAACATCATCATCATCAACATCATCAACATCATCAAGATGAAACAACAACAACAACAACCTCAAATTTCACAAATCAAACAAGTTTAAAACAAATTGATTTCATGGAACTATCACTAGGTAACAACAACAACATCAAAAAAGATCCTAGTTCTTCGAATGCAAACAACATAAACAACCAACATCAACAGCAACATCAACAAGAACAGCAACAACAACAACAACCTAGTACTCATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTCAACCGTTTAGTGATACCAAAACAGCATGCTGAAAAGTATTTCCCTCTGGATTCGACATCGAATGAGAAAGGTCTTCTTCTCAATTTCGAAGATCGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGTCAAAGCTATGTTATGACAAAAGGTTGGAGTCGTTTTGTTAAGGAGAAAAAACTTGATGCCGGTGACATTGTTTCGTTTCAACGCGGCGTTGGTGATTTGTTTCGACATCGATTGTTTATTGATTGGAGGAGAAGATTAAATCATAACCATAATCTCGATCCTTCAGGAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGGTAATAGTAGATTTTACTCACTTCCTTACCCTTCACCACAATCACAAAGGTTACAACAAAATCTTCATGACCCTTTACAGAACCAGATGAATCACAATTACCAAATGCATCCATTTCATCAACATGGTGTTGGAAATGCAAATCCAAGTTTCAATTTTCATCATCATGATCCAAGTTCCGTCTTTTACATGAGATCATCCTTACAAGCGACACCATCAATTGTTGATCAAGGAAGCTTAACAAGACAACAAGGAGGAACTGGAGGAGACAATGTTCCAAACATGATTATTGATTCTGTTCCTGTTTCTCATCATTATCATCATCAACAAAGTGGTTTTTCTACCACTGGAAATGGAAATTTTACTAGTACTAATACTATAGCTAGTAGTAGTACTACTATTAATGGTGCTGCTAAAAGGTTAAGAGAAACACTTTCAACATCATCAACAACATTTGAAGAGGACAAGAAAAGAGAAGCTTCATTGATTTTTGGTTTAGACCCTTCTTTGCAATATCATAATTTTCATCAACAAAGATGA 1365 0.3546 MELLQEVKGYSQEEEEEEEIITRTTKEDENSRINHHHHHHSPESHNSSSGGLGLLHQHHHHQHHQHHQDETTTTTTSNFTNQTSLKQIDFMELSLGNNNNIKKDPSSSNANNINNQHQQQHQQEQQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLFRHRLFIDWRRRLNHNHNLDPSGTLFTPFFLPNQQQYSIRWGGGNSRFYSLPYPSPQSQRLQQNLHDPLQNQMNHNYQMHPFHQHGVGNANPSFNFHHHDPSSVFYMRSSLQATPSIVDQGSLTRQQGGTGGDNVPNMIIDSVPVSHHYHHQQSGFSTTGNGNFTSTNTIASSSTTINGAAKRLRETLSTSSTTFEEDKKREASLIFGLDPSLQYHNFHQQR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01133 454 CDD B3_DNA 138 227 IPR003340 GO:0003677
Vifa4g01133 454 FunFam B3 domain-containing protein 133 253 - -
Vifa4g01133 454 Coils Coil 107 130 - -
Vifa4g01133 454 MobiDBLite consensus disorder prediction 1 77 - -
Vifa4g01133 454 Pfam B3 DNA binding domain 140 244 IPR003340 GO:0003677
Vifa4g01133 454 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Vifa4g01133 454 MobiDBLite consensus disorder prediction 96 133 - -
Vifa4g01133 454 SUPERFAMILY DNA-binding pseudobarrel domain 136 242 IPR015300 -
Vifa4g01133 454 SMART B3_2 140 241 IPR003340 GO:0003677
Vifa4g01133 454 Gene3D - 133 252 IPR015300 -
Vifa4g01133 454 MobiDBLite consensus disorder prediction 96 137 - -
Vifa4g01133 454 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 303 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01133 Vifa-Chr4 344077255 344078823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01133 115 271 RAV Transcription Factor Family AT2G46870 64.780 3.65e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa4g01133 B3 4.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01133 K09287 - gmx:100781424 346.28