Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01130 ATGGCTTCTTTTGTTACTATTATCATTTTGGAACTTCTTTTGTTCTTCTTCCCTTTTACTTCTTCCCTAAAACAACTTCAAACAAAACTAGTTCAACCACCTTTGATACCAAATTCATGCAACGAAACATGTGGAAAACACCATGTTCCATTTCCATTCTATCTCAACAACACTTCATGTGTATCATCATCATTCTCAACTTCTTTTCACCTCACTTGCACAAACTCTTCCACCCTTTTCATCAAACTAGCTTCACAAAACTATCCCATTTTGGACTTCTTCTCAGACGGTTTATTAGTAGACTTTCCCGGTGCGTCATCATGTCGCCAATACAACGATTTGAACTCATTCGGCGAGAGGTTTTTCGATGGAAAGAACTATTTCGGAGTATCGGTTGATAACATTGTTGGTCTCTATGATTGCGAAGATTCTTCGCTTTGTAAAGCGGATTGTGAAACGGTTAATCTTCCTGGTTGTGATGGAAGTGTAGGAGGTGGTTCTCTTGGATGTTGTTATCCACTTTCTGATCATAGTGTATGGCATGTTGGTGAAGGTAAAAGAGGAGTGAAATTGGAATTTGCTATTCCTAGGAACTTTTCTGAGGTGATTTGTGCTAAGAATGCAGATGTTGTAAATTCTACATCGGTTAAAGATGGTGTAAGGTGTGTTTGTCAAGATGCTTATGTTGGTGATGCTTTTGCTAATGGGACAGGATGTATACTATCATGTATCAAAGATGGAAAGGAAGCATATGGAAGTGACTGCTACATTAAAAGACATGATCAAAGAAAAATGGTCATCATGGCTGGAATCCTTTGTCCAGTTCTTATTGTAGCCTCCTTAGCCACACTATTTTATCTTCTAAAGCGAAAAGAAAAGCCGGGAATGTTCGATTCCGAGCAAGCTTATTACCACAACATTTCGTTCCGAAAAGCGTGTAGAACTCGACTATTCAGCCACCATGAACTAGAAGATGCCACCAATGGTTTCGAAGAGAACAGAAAATTCATGCAATGCAATAACAGCACAATGTTTGCAGGTGTCCTTGGCGACGGATCACATGTAGCTATACACAAATTATCAAAATGTGAGAACGAAAAAGACATGATCCAAGTCATGTCACAAATCGAAGTCCTATCTTCGATTCTACATAGAAATATCGCATTGATTCTTGGTTGTTGCGTCGATTCTAACTACGCGCCTCTAGTGATTTACGAGTATCCTGCAAATGGTACCTTAGAGGATCACTTACATCAGAAGTTCCAAAACAAAGGACAGAAACTCGGTTTAGATTGGTATAGAAGATTGAATATTGCAACCGAAATTGCTAGTACTATTGCATTGTTACATTATGATAAATCTCCTCCAATATTTCATCATAACCTAAAGTCAAGTTGCATATTCCTAGATGATGATTTTTCAGTCAAGGTTGCAGGATTTGGACTAGTTAATCACGATTACACGAAATGCCAAAATCATGTATGCAAAAACGATGTATATGACATAGGTGTGATGCTACTTGAGATTATCTATGGATCAAATCAATTGGACACACCTAAATTAGCACTGAAGAAAATTAGGGACGGGAAGATCGAAGAAATTGTTGATCCGGTTCTTGATTATCACGAACAACCGCATTGTTGTCAAGAACAGATTCAGATTATGGCTGATCTTGCAACAAGATGTTTGCTGTTTGGTGCAGATGGAAAGATGGGAATGGTTGATGTTGCTAGGGAGTTGGTTCATTTGAGTAAAGAGAGTGTTGATGGTGGAAATGTGAAAGGACTTGTGCTTGAAGAAACATTCTCAAATTCAAGTCTTCTTCAAATGATATCTATGTCTCCTGATTCAATGAATGTTCCTTGA 1866 0.3821 MASFVTIIILELLLFFFPFTSSLKQLQTKLVQPPLIPNSCNETCGKHHVPFPFYLNNTSCVSSSFSTSFHLTCTNSSTLFIKLASQNYPILDFFSDGLLVDFPGASSCRQYNDLNSFGERFFDGKNYFGVSVDNIVGLYDCEDSSLCKADCETVNLPGCDGSVGGGSLGCCYPLSDHSVWHVGEGKRGVKLEFAIPRNFSEVICAKNADVVNSTSVKDGVRCVCQDAYVGDAFANGTGCILSCIKDGKEAYGSDCYIKRHDQRKMVIMAGILCPVLIVASLATLFYLLKRKEKPGMFDSEQAYYHNISFRKACRTRLFSHHELEDATNGFEENRKFMQCNNSTMFAGVLGDGSHVAIHKLSKCENEKDMIQVMSQIEVLSSILHRNIALILGCCVDSNYAPLVIYEYPANGTLEDHLHQKFQNKGQKLGLDWYRRLNIATEIASTIALLHYDKSPPIFHHNLKSSCIFLDDDFSVKVAGFGLVNHDYTKCQNHVCKNDVYDIGVMLLEIIYGSNQLDTPKLALKKIRDGKIEEIVDPVLDYHEQPHCCQEQIQIMADLATRCLLFGADGKMGMVDVARELVHLSKESVDGGNVKGLVLEETFSNSSLLQMISMSPDSMNVP 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01130 621 Pfam Protein tyrosine and serine/threonine kinase 352 487 IPR001245 GO:0004672|GO:0006468
Vifa4g01130 621 Gene3D Transferase(Phosphotransferase) domain 1 409 594 - -
Vifa4g01130 621 Pfam Wall-associated receptor kinase galacturonan-binding 40 93 IPR025287 GO:0030247
Vifa4g01130 621 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 37 584 IPR045274 GO:0007166
Vifa4g01130 621 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
Vifa4g01130 621 ProSiteProfiles Protein kinase domain profile. 330 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01130 621 SUPERFAMILY Protein kinase-like (PK-like) 313 580 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01130 Vifa-Chr4 341893619 341896078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01130 189 583 Receptor kinase-like Gene Family AT2G23450 32.719 3.75e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Vifa4g01130 PK_Tyr_Ser-Thr 3.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01130 - - gmx:100810557 822.772