Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01128 ATGGATTTGGTAGGACCCACCATGAACCGGTTGGTCGGAGATTACATACTGGGTCCTCGAATCGGGTCGGGTTCATTTGCAGTGGTGTGGCGTTCCCGTCATAGAAATTCAGGTTTGGAGGTTGCCATCAAGGAGATTGATCAGGCACAATTGAGTCCCAAAGTTAGAGATAATCTCATCAAAGAGATTACTATTCTAAGAACTATTCATCACCCTAACATCGTTCGACTTTTTGAAGCTATTGAGACCAATGATAGGATTTACCTTGTTTTGGAGTATTGTGGTGGAGGGGACCTTGCTGCTTACATACATCGCTATGGGAGAGTTTCGGAATCCATTGCGAAACATTTCATGAGGCAATTGGCTGCTGGGTTGCAAGTGCTTCAAGAAAAGAACCTCATACATAGAGATTTAAAACCACAGAACTTACTGTTGGAAACTACTTCAGCTACACCACTTATGAAAATCGGGGATTTTGGTTTTGCAAGGTCTCTCACACCGCTGCAGTTGGCAGATACACTATGTGGTTCACCTTATTACATGGCTCCCGAGATAATTCAGAGTCAGAAATACGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATATTGTATCAGCTAGTGGTCGGGAAACCGCCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAATATTTTGGCATCTACTGAACTGCACTTTCCACCAAAGATTTTAAAAGAGCTGCATCTCGATTGTGTGGATCTTTGCAGAAGCCTTTTACGTCGAAATCCAGATGAGAGATTAACATTCAAGGCATTCTTCAATCACAAATTCCTACATGATAAGAGGTCCGTTGTGAATATTGAGCAGTTTCATTCACATCAATCGGAAAGCTCAATGGTTAATCAATTAGTTGACTCTGCGCTTGAGGTGTCTCAAGCACATTCCGAGTATCATGTTGAGAAAGTTTCTCATTTAATGGAGTCCATTGAGAAAGGTTATGTCCTCATCAATCCTCATTTTGCATCATTGGAGGATTTCTCTGACTACTTTGAGGCATCCGCGCATGAAAATCCCTCGAGCGAGGTTTCTATCCGTGCTTCAAAGACGACTAACCTAGAAATCGAAAAGCAAACAATGAACTTTTCTTTAGGGCACCCTTCAAACAAGTTAAAGTTGTTGCATGAGTATGTGCAAGTCCTCGGAGAACTTTCACAAGAAAAGTATAATACAGGACTGTACCTAGAATCACTTGCAGTTGAGTTGGTGGTTTTGGCTATATGGAAGAAAGCTCTAGACATTTGTAGCACTTGGTTAGCCCCGATTTCTAAGAACGAGTTGCACGGAAGCAGTTCAGTTAATGAGTCTGTAATTGCCCGTGGAGACGCGGGCTTATCACAAACTATCGATCATAAAATAAATTTCAACGACCGTCCTTCCGTCTCCTTATGGGTCAAACATGGATTTATCATCGCAGTCGATCGCGCTGAGAAACTATCATATCATATTCAAAACATGGATGGTGCAGTTGAGATGCCAGATGCAATCGAGATTATATTCAGACAAGCACTCTTAGTCGGGACAAATGGTGCTGTAGATGAGTACATGAATAACAAAGATAAGTCTGCTGCAACTTACTCAAAAGCAATTCTTCTACTTTCATTCATTGTGGGAGAAGCAGAGAATCTTCCACTGAACCCTCCATTTTCACTTCTTTCTAACGATCATAAGCGAATCGAGCAATATATTCACAACTTGCAGTATCGCAAGATATCTGTATCAGACTCATCTGCAGAGGAAGCTCAATAG 1791 0.4154 MDLVGPTMNRLVGDYILGPRIGSGSFAVVWRSRHRNSGLEVAIKEIDQAQLSPKVRDNLIKEITILRTIHHPNIVRLFEAIETNDRIYLVLEYCGGGDLAAYIHRYGRVSESIAKHFMRQLAAGLQVLQEKNLIHRDLKPQNLLLETTSATPLMKIGDFGFARSLTPLQLADTLCGSPYYMAPEIIQSQKYDAKADLWSVGAILYQLVVGKPPFDGNSQLQLFQNILASTELHFPPKILKELHLDCVDLCRSLLRRNPDERLTFKAFFNHKFLHDKRSVVNIEQFHSHQSESSMVNQLVDSALEVSQAHSEYHVEKVSHLMESIEKGYVLINPHFASLEDFSDYFEASAHENPSSEVSIRASKTTNLEIEKQTMNFSLGHPSNKLKLLHEYVQVLGELSQEKYNTGLYLESLAVELVVLAIWKKALDICSTWLAPISKNELHGSSSVNESVIARGDAGLSQTIDHKINFNDRPSVSLWVKHGFIIAVDRAEKLSYHIQNMDGAVEMPDAIEIIFRQALLVGTNGAVDEYMNNKDKSAATYSKAILLLSFIVGEAENLPLNPPFSLLSNDHKRIEQYIHNLQYRKISVSDSSAEEAQ 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01128 596 CDD STKc_ATG1_ULK_like 21 272 - -
Vifa4g01128 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vifa4g01128 596 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01128 596 SUPERFAMILY Protein kinase-like (PK-like) 11 308 IPR011009 -
Vifa4g01128 596 SMART serkin_6 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01128 596 FunFam Serine/threonine-protein kinase ATG1 7 316 - -
Vifa4g01128 596 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vifa4g01128 596 Gene3D Transferase(Phosphotransferase) domain 1 6 340 - -
Vifa4g01128 596 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01128 596 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 10 435 IPR045269 GO:0004674|GO:0006914
Vifa4g01128 596 FunFam Non-specific serine/threonine protein kinase 4 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01128 Vifa-Chr4 340852785 340856681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01128 5 314 CBL-interacting serine-threonine protein kinases AT2G30360 32.278 6.67e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vifa4g01128 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01128 - K08269 tpra:123884297 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01128 4 340852785 340856681 Vifa4g01128 4 340852785 340856681 ECH