Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01126 ATGTCTCCTTCACTAGAAACCATTGAAACCATTAATGGTGAAGCAAAGCACGTTACACAAGGACATGTCTATGAAGAAGATGGCATAGTTTTTGCCTTGAACTTGATTACATCTGTCATGCTTCCATTGACAGTCCGATCTGCAATTGAGCTTGGCATCTTCGACATTTTAGCCAAAACAGGAAAAGATGCCAAGCTCTCTGCCGATGATATAGCAGTTAAAATCGGATCAAAGAACGTGGAAGCACCCGCAATGCTGGATCGTCTCCTGAGATTATTGGCTAGTCACTCCATGTTACATTGCTCGCTATCCGAAGAGAAACAAGGGCTTGGATCTCCTCAGAAGCTCTATAGCCTTGCTCCTGCCTCTAAGTATTTTGTGACAGATGCTGATGGTGTATCTCTTGGTGCAACATTAAAACTTCCTTTGGACAAAGTTTTCTTGGAAAGCTGTACTGAAATGAAAGGAGCAATATTAGAAGGAGGTATACCATTCAATAGGGTTTATGGCATGCATGCATTTGAATATCCAACTGTGGATCCAAGGTTCAATGATGTTTTCAACAGTTCTATGGTGAATTGTACAACTATAATCATGAAGAGGATCCTTGAGATCTATGATGGTTTTGAGAACATCAATAAGCTTGTAGATGTTGGTGGTGGTCTTGGGATCAATCTCAAATTAATCACTTCAAAATATCCTCATATACAAGGTGTTAATTTTGACTTGCCACACGTCCTAGAACATGCACCAGCCTATGAAGGTGTGACACATGTGGGGGGAGATATGTTTGAGAGTGTACCTAATGGAGACGCCATTTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGTTATTGAAGAATTGTCACAAAGCTATTCCTGATAATGGAAAAGTGATTGTTGTGGAGTTAATTATACCTGTTTTTCCTGAGAGTACAACTGTTGCTAAGATGGGTTTCCAATCTGACCTCTTAATGATGGCTCAAAATCCAGGAGGGAAAGAGAGAACTGAAGATGAGTACAAGGAATTGGCATTAAGATCTGGATTTAGTGAAATCAAAATTGCATGCTATTTCTCTGGAGTTTGGGTTTTGGAATTAATTAAGTAG 1125 0.3964 MSPSLETIETINGEAKHVTQGHVYEEDGIVFALNLITSVMLPLTVRSAIELGIFDILAKTGKDAKLSADDIAVKIGSKNVEAPAMLDRLLRLLASHSMLHCSLSEEKQGLGSPQKLYSLAPASKYFVTDADGVSLGATLKLPLDKVFLESCTEMKGAILEGGIPFNRVYGMHAFEYPTVDPRFNDVFNSSMVNCTTIIMKRILEIYDGFENINKLVDVGGGLGINLKLITSKYPHIQGVNFDLPHVLEHAPAYEGVTHVGGDMFESVPNGDAIFLKWILHDWSDEHCLKLLKNCHKAIPDNGKVIVVELIIPVFPESTTVAKMGFQSDLLMMAQNPGGKERTEDEYKELALRSGFSEIKIACYFSGVWVLELIK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01126 374 SUPERFAMILY "Winged helix" DNA-binding domain 26 129 IPR036390 -
Vifa4g01126 374 PIRSF O-mtase 11 374 IPR016461 GO:0008168
Vifa4g01126 374 FunFam Caffeic acid O-methyltransferase 127 374 - -
Vifa4g01126 374 Pfam Dimerisation domain 44 94 IPR012967 GO:0046983
Vifa4g01126 374 Gene3D Vaccinia Virus protein VP39 184 363 IPR029063 -
Vifa4g01126 374 Gene3D - 40 202 IPR036388 -
Vifa4g01126 374 PANTHER O-METHYLTRANSFERASE 37 355 IPR016461 GO:0008168
Vifa4g01126 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 374 IPR016461 GO:0008168
Vifa4g01126 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 371 IPR029063 -
Vifa4g01126 374 Pfam O-methyltransferase domain 153 356 IPR001077 GO:0008171
Vifa4g01126 374 FunFam Caffeic acid 3-O-methyltransferase 11 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01126 Vifa-Chr4 340667904 340669328 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01126 17 374 Monolignol Biosynthesis Gene Families AT5G54160 52.235 3.08e-135 389