Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01124 ATGTCACTAGAAACCATTAACGGGAAAGAAAATCACCATCCACATGGAGATGACCATGAAGAAGATGCCATGGTTTTTGCTTTGAACTTGATTAATTTGGTCGTGCTTCCTCTAACCGTGCGATCTGCAGTTGAGCTTGGTATCTTTGACATCCTAGCCAAAGCTGGGAAAGATGCCAAACTCTCTGCAGATGACATAGCTGTTAAGATTGGATCGAAGAACAAAGAAGCACCTGCAATGTTGGATCGTCTTATGAAGTTATTGGCTAGTCACTCCATGCTATATTGCTCGCTATCCAAAGAGAGACAAGGACTTGGGTCTCCTCAGAGGCTCTATAGCCTTGCTCCTGCTTCTAAGTATTTGGTGACAAATCTTGATGGTGTGTCGTTGGGACAAGTATTAAACTTAACTTTAGACAAAGTTTATTTGGGAAGCTGGAATGGAATGAAAGGAGCAATTTTGGAGGGAGGTATACCATTCAATAGGGTTTATGGCATGCAATCATTTGAATATTCAACTGCAGATCCAAGGTTTAATGATATTTTCAACAATTCTATGGTGAATTGTACAACTATAATCATGAAGAGGATTCTTGAGATCTATGATGGTTTTGAGCACATCAATAAGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAAGCTAATTACTTCTAAATATCCTCATATTCAAGGTGTTAATTTTGATTTGTCACATGTCCTAGAACATGCACCTACCTATGAAGGTCTAACACATGTGGGAGGAGATATGTTTGAGAGTGTACCTAATGGAGATGCAATTTTTTTGAAGTGGATACTTCACGATTGGAGTGATGAACATTGCTTGAAGTTATTGAAGAATTGTCATAAAGCTATTCCTGATAATGGAAAAGTGATTGTTGTGGAGTTAATTTCACCTGTTCTTCCTGAGAGTACAACAATAGCCAAGATGGGTTTTCATGCTGACGTCTTAATGATGACTCAATTTTCAGGAGGGAAAGAGAGAACCAAAGATGAGTTTAATGAATTAGCATTAGGATCTGGATTCCGTGGCATCAAATTTGCTTGCTATTTCTCTAGCTTTTGGGTTATGGAGTTCTTGAAGTAG 1110 0.3892 MSLETINGKENHHPHGDDHEEDAMVFALNLINLVVLPLTVRSAVELGIFDILAKAGKDAKLSADDIAVKIGSKNKEAPAMLDRLMKLLASHSMLYCSLSKERQGLGSPQRLYSLAPASKYLVTNLDGVSLGQVLNLTLDKVYLGSWNGMKGAILEGGIPFNRVYGMQSFEYSTADPRFNDIFNNSMVNCTTIIMKRILEIYDGFEHINKLVDVGGGLGINLKLITSKYPHIQGVNFDLSHVLEHAPTYEGLTHVGGDMFESVPNGDAIFLKWILHDWSDEHCLKLLKNCHKAIPDNGKVIVVELISPVLPESTTIAKMGFHADVLMMTQFSGGKERTKDEFNELALGSGFRGIKFACYFSSFWVMEFLK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01124 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 369 IPR016461 GO:0008168
Vifa4g01124 369 PANTHER O-METHYLTRANSFERASE 34 352 IPR016461 GO:0008168
Vifa4g01124 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168
Vifa4g01124 369 FunFam Caffeic acid 3-O-methyltransferase 6 121 - -
Vifa4g01124 369 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
Vifa4g01124 369 FunFam Caffeic acid O-methyltransferase 122 369 - -
Vifa4g01124 369 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vifa4g01124 369 Pfam Dimerisation domain 39 89 IPR012967 GO:0046983
Vifa4g01124 369 Gene3D - 4 121 IPR036388 -
Vifa4g01124 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 367 IPR029063 -
Vifa4g01124 369 Gene3D Vaccinia Virus protein VP39 123 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01124 Vifa-Chr4 340306496 340307925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01124 20 369 Monolignol Biosynthesis Gene Families AT5G54160 52.000 3.18e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01124 K13066 - gmx:100789402 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01124 4 340306496 340307925 Vifa4g01124 4 340306496 340307925 ECH