Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01123 ATGTCACTAGAAACCATTAACGGTGAAGAAAATCACCATCCACATGGAGATGTTCATGAAGAAGATGCCATGGTTTTTGCTTTGAATTTGATTAATTTGGCCGTGCTTCCTCTAACCGTGCGATCTGCAGTTGAGCTTGGTATCTTTGACATCCTTGCCAAAGCTGGGAAAGATGCCAAACTCTCTGCAGATGACATAGCTGTTAAGATTGGATCGAAGAACAAAGAAGCACCTGCAATGTTGGATCGTCTTATGAAGTTATTGGCTAGTCACTCCATGCTGTATTGCTCGCTATCCAAAGAGAGACAAGGACTTGGGTCTCCTCAGAGGCTCTATAGCCTTGCTCCTGCTTCTAAGTATTTGGTGACAGATCTTGATGGTGTGTCGTTGGGACAAGTATTAAACTTAACTTTGGACAAAGTTTACTTGGGAAGCTGGAATGGAATGAAAGGAGCAATTTTGGAGGGAGGTATACCATTCAATAGGGTTTATGGCATGCAATCATTTGAATATCCAAATGTGGATCCAAGGTTTAATGATATTTTCAACAATTCTATGGTGAATTGTACAACTATAATCATGAAGAGGATTCTTGAGATCTATGATGGTTTTGAGCACATCAATAAGCTTGTAGATGTTGGTGGTGGTCTTGGGATCAATCTCAAGCTAATTACTTCCAAATATCTTCATATTCAAGGTGTTAATTTTGATTTGCCACATGTTATAGAACATGCACCTACCTATGAAGGTGTGACACATGTGGGAGGAGATATGTTTGAGAGTGTACCTAATGGAGATGCAATTTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGTTATTGAAGAATTGTCATAAAGCTATTCCGGATAATGGAAAAGTGATTGTTGTGGAGTTAATTTCACCTGTTCTTCCTGAGAGTACAACAATAGCTAAGATGGGTTTTCATGCTGACGTTTTAATGATGACTCAATTTTCAGGAGGAAAAGAGAGAACCAAAGATGAGTTTAATGAATTGGCATTAGGATCTGGATTTCGTGGCATCAAATGTGCTTGTTATTTCTCTAGCTTTTGGGTTATGGAATTCTTGAAGTAG 1110 0.3883 MSLETINGEENHHPHGDVHEEDAMVFALNLINLAVLPLTVRSAVELGIFDILAKAGKDAKLSADDIAVKIGSKNKEAPAMLDRLMKLLASHSMLYCSLSKERQGLGSPQRLYSLAPASKYLVTDLDGVSLGQVLNLTLDKVYLGSWNGMKGAILEGGIPFNRVYGMQSFEYPNVDPRFNDIFNNSMVNCTTIIMKRILEIYDGFEHINKLVDVGGGLGINLKLITSKYLHIQGVNFDLPHVIEHAPTYEGVTHVGGDMFESVPNGDAIFLKWILHDWSDEHCLKLLKNCHKAIPDNGKVIVVELISPVLPESTTIAKMGFHADVLMMTQFSGGKERTKDEFNELALGSGFRGIKCACYFSSFWVMEFLK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01123 369 PANTHER O-METHYLTRANSFERASE 34 350 IPR016461 GO:0008168
Vifa4g01123 369 Gene3D Vaccinia Virus protein VP39 179 358 IPR029063 -
Vifa4g01123 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 367 IPR029063 -
Vifa4g01123 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168
Vifa4g01123 369 FunFam Caffeic acid 3-O-methyltransferase 6 121 - -
Vifa4g01123 369 FunFam Caffeic acid O-methyltransferase 122 369 - -
Vifa4g01123 369 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vifa4g01123 369 Pfam Dimerisation domain 39 89 IPR012967 GO:0046983
Vifa4g01123 369 SUPERFAMILY "Winged helix" DNA-binding domain 19 124 IPR036390 -
Vifa4g01123 369 Gene3D - 35 197 IPR036388 -
Vifa4g01123 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 369 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01123 Vifa-Chr4 339468060 339469487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01123 18 369 Monolignol Biosynthesis Gene Families AT5G54160 51.989 3.08e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01123 K13066 - gmx:100789402 524.242