Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01118 ATGGAGAGGCTTCAAGGACCCATCAATTCTTCTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTTCTTGACACAGAAAGCTTAAGATTTGAGGAAGATGAACAGTTTCTGATATCAAGTTTAGAAGACAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGAATCTCCAATTTATCCTTTAAAAGAACCAAACTTTCAAACACTTTTGAGGCTACAACATATGAATAAACCATGGGAAGAAGACATAGCCTTTATTCCTAGAATGGATTCACATCAACAAGTTCAAACAACATTGGACTTTGAAAGCTGTGTTACACATGATGTACTAGAGATGCAGTCACCAGTGAAATCAGAAAGCTATGAGCTTCAACACAAAGTTTCAGCTTCATGCATTCAGAAATTGAGCTATGAGTGTAACCAAGAACAAACAAAAACATGTTCCGAATCTCAACTTGTGACAACAAGGGAAAAGAGAAAGAGGAAAAGAACAAGACCGGTTAAGAATAAGGAAGATGTCGAGAATCAAAGGATGACACACATTGCTGTTGAACGCAATAGGAGAAGACAAATGAATGACCACCTTAGTGTTCTTAGGTCTCTTATGCCATCTTCTTATATTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTGATTTTGTGAAGGAGTTAGAACAATTGCTTCAATCTCTTGAAGTACAAAAAAGGTTAAAAAAGAGTGAAGAATTTGGATGTTCATCCTCATCGTCATCACCACCAGCTAGTTATGGAACAAAATTATCATGTTGTGAGGAAAATGAGGTGAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTGACATTGATTCAAACACATGTGAACTTGAAAATTGAGTGCAAAAGAAGATGTGGTCAATTGATAAAAGTTATTGTTGCTTTGGAGAATCTTAGGCTAACTATTCTTCACCTTAATATCACATCCTTTGAGTCTTCTGTACTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATGAAATATTCAACTACATTAATGGTAACTAG 1095 0.3607 MERLQGPINSSFFGEVNCLDQTFLDTESLRFEEDEQFLISSLEDNMPFLQMLQSVESPIYPLKEPNFQTLLRLQHMNKPWEEDIAFIPRMDSHQQVQTTLDFESCVTHDVLEMQSPVKSESYELQHKVSASCIQKLSYECNQEQTKTCSESQLVTTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLQSLEVQKRLKKSEEFGCSSSSSSPPASYGTKLSCCEENEVKAENKSEAADIKVTLIQTHVNLKIECKRRCGQLIKVIVALENLRLTILHLNITSFESSVLYSLNLKIEEDCKLGTANDIAEAVHEIFNYINGN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01118 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 244 IPR036638 GO:0046983
Vifa4g01118 364 CDD bHLH_AtFAMA_like 179 248 - -
Vifa4g01118 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 227 IPR011598 GO:0046983
Vifa4g01118 364 PANTHER TRANSCRIPTION FACTOR FAMA 105 358 IPR044283 GO:0003700|GO:0010052
Vifa4g01118 364 Coils Coil 224 244 - -
Vifa4g01118 364 Gene3D - 167 244 IPR036638 GO:0046983
Vifa4g01118 364 SMART finulus 182 233 IPR011598 GO:0046983
Vifa4g01118 364 Pfam Helix-loop-helix DNA-binding domain 177 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01118 Vifa-Chr4 338186746 338188598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01118 40 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.620 5.44e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01118 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01118 - - gmx:100789928 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01118 4 338186746 338188598 Vifa4g01118 4 338186746 338188598 ECH