Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01115 ATGAATTGCAATTACAAAGTTATTGCGGTTTCTGATGGAACGAAGGCATGGAAGATTTTGCAAATCAAGCAAATTGAGATTGATATTGTATTAACAGAAATGGAGTTGCCGGAAATATCTGGATTAGCACTTCTTTCTTTGATGATGGAGCATGAAACTTGCAAAAATATTCCTCTTATAATGATGTCTTCTCACGATTCACGTAGCATGGTAATGAATTGTATGTGTAAAGGTGCAGCTGATTTTCTAATCAAACCTGTTCGGAGGAATGAGCTTACGAACTTATGGCAGCATGTTTGGAGAAAGCATGTTCTTAACAGGCCTCTCCAAAATACATCTGCACAAGAAAAACGTAAAGTTGCCATCGAAGACAATTTTACTGACAATCAATCCACTGATTCTGTTTCTGTGGCTTCCTCACAGAAAAATAATGAATGCAGTGAAAAATTGAGTGAGGCTCAATTAACAAAACTTGAAAGGGAATCAACTAAGCTTAATGATGAAGCAAGAGACTCAAGGCTAGAACAAGACTACAGTACTTCTGAAGTTGAACCCAAAATTGAAATATATAGAGCTGAGTTAAGCAGAGAGAACCACGATACTGATACTGAGATACGTGGATGCAGTGATGAAGGGATGGAACCTTCTAGCAAAGCTATTGACTTAATTTCCACAGTTGGGAATCTCCGAAAGTGCACTAAGGAAATCCATTGCGTTAATGGTGATAAAGAACCAAAGTATGATTTTGGAAAAGATTTGGAGCTGTCTTTAAGAAGTGATTTTTCCGGCAGCTCATGCAAACAAGCAAGTGAAGCAACTGAGGAATGGCAAAGATTGAACCACTCAAATACTTCTGCCTTTTCCCAGTTTGATGGTAGTAAGATGTTGTGGCCACTTTTTCAAAACTCCAATTGGAGCTCTAATAAACCTCATGAATTATCAGTAGTTACTGCTGATAATTGCATTCAATATGGTGGCCCGATTAAAATAGAAGATATGACTAATGCAGTCACGGCTCATTACGGACAATTTGGACCGAAATTATTTAACACTGAACTCTTAGCTGATAATGTTCTCCATCACATGTTGATTCCTAAATCAAATTGCCAAAAAGAGAGCTCTCCCTTTCCCTCAAGTTCCTCTTCCCAGTCCAATTCTGAAAGTCACAATTCAGACCATCATCATAATTGGTCTTATGATGCTAACTACAATTTTCTTAATCAAAATGTTTCTGAAAAATATGATTTGGATCATGTAGTGCATGATTCTCCTAGTGTTGGTTCGGGATTCGGCAATGACATTTGCCGAGCTTCAAATTATATTAATAGTGACAATGATGAAAGAGCTACTTCAAATGTGGTTACAAAGAATTCAAGAAGTTCTAGTGATTGTAGGCGCTACAGAAAAGATTGTTATGATTATGATTATGATGATGATGAATTTAGATTGAGTGATTCTCATCGCTCCAGTCGAAGAGAAGCAGCTCTAATTAGGTTTCGTTTAAAGCGAAAAGAGAGATGCTACACGAAAAAGGTTCGGTATCAGAGCCGGAAAAGAGTCGCAGAGCAGCGCCTTCGGGTGAAAGGGCAGTTCGTACGTAGAGAACACGATCATGATAATCCAAATGCAGATGCTAATGGTGATCAATGA 1650 0.38 MNCNYKVIAVSDGTKAWKILQIKQIEIDIVLTEMELPEISGLALLSLMMEHETCKNIPLIMMSSHDSRSMVMNCMCKGAADFLIKPVRRNELTNLWQHVWRKHVLNRPLQNTSAQEKRKVAIEDNFTDNQSTDSVSVASSQKNNECSEKLSEAQLTKLERESTKLNDEARDSRLEQDYSTSEVEPKIEIYRAELSRENHDTDTEIRGCSDEGMEPSSKAIDLISTVGNLRKCTKEIHCVNGDKEPKYDFGKDLELSLRSDFSGSSCKQASEATEEWQRLNHSNTSAFSQFDGSKMLWPLFQNSNWSSNKPHELSVVTADNCIQYGGPIKIEDMTNAVTAHYGQFGPKLFNTELLADNVLHHMLIPKSNCQKESSPFPSSSSSQSNSESHNSDHHHNWSYDANYNFLNQNVSEKYDLDHVVHDSPSVGSGFGNDICRASNYINSDNDERATSNVVTKNSRSSSDCRRYRKDCYDYDYDDDEFRLSDSHRSSRREAALIRFRLKRKERCYTKKVRYQSRKRVAEQRLRVKGQFVRREHDHDNPNADANGDQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01115 549 SMART REC_2 1 96 IPR001789 GO:0000160
Vifa4g01115 549 Pfam Response regulator receiver domain 5 94 IPR001789 GO:0000160
Vifa4g01115 549 MobiDBLite consensus disorder prediction 528 549 - -
Vifa4g01115 549 ProSiteProfiles Response regulatory domain profile. 1 100 IPR001789 GO:0000160
Vifa4g01115 549 Coils Coil 148 175 - -
Vifa4g01115 549 ProSiteProfiles CCT domain profile. 492 534 IPR010402 GO:0005515
Vifa4g01115 549 MobiDBLite consensus disorder prediction 369 393 - -
Vifa4g01115 549 MobiDBLite consensus disorder prediction 125 151 - -
Vifa4g01115 549 Pfam CCT motif 492 534 IPR010402 GO:0005515
Vifa4g01115 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 309 IPR045279 GO:0009736
Vifa4g01115 549 MobiDBLite consensus disorder prediction 123 181 - -
Vifa4g01115 549 SUPERFAMILY CheY-like 3 116 IPR011006 -
Vifa4g01115 549 Gene3D - 1 213 - -
Vifa4g01115 549 MobiDBLite consensus disorder prediction 369 387 - -
Vifa4g01115 549 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01115 Vifa-Chr4 336427171 336430521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01115 477 541 Response Regulator Gene Family AT5G24470 55.224 4.30e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vifa4g01115 Response_reg 9.8e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01115 K12130 - gmx:100791698 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01115 4 336427171 336430521 Vifa4g01115 4 336427171 336430521 ECH