Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01109 ATGGATCAAAGTGGAGCAGCACAAGAAAATCCTCTTCTCATCGCTTTCGATCTCGTTCCTTTAAGTGTGAAAATGTCGCTCGGAGAGGTTGCTTGCAGCTACTCGCTTATGATCCTTCATGATGATAACATCGCAGTCACTGGTGAGAAAATCTCAACATTGTTGAAAGCTGCAAAGGTTGATGTTGAAGCTTATTGGCCAAACTTATTTGCCAAACTTGCTGAGAAGAAAAACCTTGATGATTTGATTTTGAATGCTGCTGGAGGTGGGGCTCCTGCCTCTGTTTCAGCTCCAGTTGCTGCTGCTTCTGCCACGGCAGTTGCTGCTCCAACGGAGGAGAAGAAGGAAGAACCAAAGGAAGAAAGTGATGATGACATGGGATTCAGCTTGTTTGATTAG 399 0.4486 MDQSGAAQENPLLIAFDLVPLSVKMSLGEVACSYSLMILHDDNIAVTGEKISTLLKAAKVDVEAYWPNLFAKLAEKKNLDDLILNAAGGGAPASVSAPVAAASATAVAAPTEEKKEEPKEESDDDMGFSLFD 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01109 132 Pfam 60s Acidic ribosomal protein 46 131 - -
Vifa4g01109 132 CDD Ribosomal_P1 29 131 - -
Vifa4g01109 132 MobiDBLite consensus disorder prediction 110 126 - -
Vifa4g01109 132 Gene3D - 25 86 IPR038716 -
Vifa4g01109 132 MobiDBLite consensus disorder prediction 106 132 - -
Vifa4g01109 132 Hamap 50S ribosomal protein L12 [rpl12]. 30 132 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa4g01109 132 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 25 132 - -
Vifa4g01109 132 FunFam 60S acidic ribosomal protein P1 25 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01109 Vifa-Chr4 335825493 335828421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01109 25 132 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.509 4.40e-36 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01109 K02942 - sind:105160280 125.561