Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01102 ATGCAAGCAATGGGGTTATCAGTAGCAGTTTCAGTTCCATTTTACCATTCCAGATTATGCATCAATGCCTCTCCTCATCCACCCATTCCCCTCAATTTGAATCATGGCTTTTCCAAATCACTTACATTCAGGGACAGACTAACTCGTGGGAAGAGTAGCTATGTCATTCGTTCCCAAAAGAATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGAGCTCGCCAGAAAGACTTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATGTGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGGCGTATGTCACTTTAGAACCTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTGAAGTTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAGGGCCTCAATGAGGGTTATATTCATCACATGTTGACCCAGAAGCCTCTGCTTACTTTGAGGTATTCTCTTTCTGTCAACGGAAACTTGTTGGACTCACTTGGGAATGGAGTAACTCACTCTGGTGGATACTATTCTAGGCTATTACAAGAATATGATGCAGTTATATTATCCTCTTCTTTATTCCGTGAAACTTTATCGGTCGACTCCGTACCTTCATCTCAAGAACCTGGAGCCAATCAACCCATTCGGTTTATAATGCATAGAGATTCTGGTTCTGGTTCTTCAAATCAAATTCCATTTATAATCGATAACGTTACTGATAAAATGATAATCCTTCATCTCTCTTTTTCTTCTCCCTCCCACACCACCACCCTCCAAACCAACAACATCGTCTTCCAGTATTCTCTCAACGCTTATCTAAATTTCATTAGAGGTGACGATGAAGCCATCTCCGAACTCGACCACGAAATCCGCACCAGGATTCTCCGTGAGAAGTCTAACGCTGACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTTGAAAGAGAGGGATTTGGTGGATAAGGAGAAACAGTTGCAGGCTAAGGTCGTGGAGAGCGACAACATATGTCAAGAGAATAAAATGCTAAAGAAGAAGGTGGAGTCACAGCCTTTCAATACCAGGGACGTTGAGAGGATGAAAAGAGAGTTGCAGGCTGCTGAGAGGGATGCTGGAGAGGCTGAACTTGCTAGGAATGATTGGGAGGAAAAGTGTTGGGAGCTTGACCGTACTCTCGCAAATAACATCAGAGACTTAGAACCTATCACCAGGGATTGTAACCAAGCCCTTAAGAGGTTGAAGATTGGTAATGACATTCAATATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAGATCATGGGCATATGCTGCTACCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGAAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTACCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGAAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGAAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTAAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACAGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTAAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTGTGCAAATCAACAAAGAGAATCGCAAGCAGCTTCCTTATCAAATTACAGGCATGGTTAAACCATCCAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGCAGGTCTGTGCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCACACTGGTGTTGTTTATCATCACCCTAAGGGTTCTACAACATTTTATCATCATTCATCGGGTTCTATTGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 2898 0.4172 MQAMGLSVAVSVPFYHSRLCINASPHPPIPLNLNHGFSKSLTFRDRLTRGKSSYVIRSQKNRDDDGDVDGFYMRKSVELARKTLGCTSPNPLVGCVIVKDGQIVGQGFHPKPGQPHAEVFALRDAADLDENATAYVTLEPCNHFGRTPPCTEVLIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYIHHMLTQKPLLTLRYSLSVNGNLLDSLGNGVTHSGGYYSRLLQEYDAVILSSSLFRETLSVDSVPSSQEPGANQPIRFIMHRDSGSGSSNQIPFIIDNVTDKMIILHLSFSSPSHTTTLQTNNIVFQYSLNAYLNFIRGDDEAISELDHEIRTRILREKSNADNTLAAAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMLQGDVIKFHKIIDEFGLRIELKERDLVDKEKQLQAKVVESDNICQENKMLKKKVESQPFNTRDVERMKRELQAAERDAGEAELARNDWEEKCWELDRTLANNIRDLEPITRDCNQALKRLKIGNDIQYVLNPKGTTPAEIMGICCYRTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMEKRLPKEMLINLFNSLETTTAICFVCNRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAKSIDNVGLHDLFQEYGNILSRKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPKPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVKREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFVQINKENRKQLPYQITGMVKPSKLLTCFQWGALMVAGLCRGKMLGKAYCSSSIHTGVVYHHPKGSTTFYHHSSGSIGLESPADGRRSSESSYRIGDNGTSGGTN 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01102 965 FunFam Riboflavin biosynthesis protein RibD 67 206 - -
Vifa4g01102 965 CDD Riboflavin_deaminase-reductase 73 185 - -
Vifa4g01102 965 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 67 189 IPR002125 -
Vifa4g01102 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 738 815 IPR000504 GO:0003723
Vifa4g01102 965 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 73 287 IPR004794 GO:0008835|GO:0009231
Vifa4g01102 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 649 717 IPR000504 GO:0003723
Vifa4g01102 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 740 808 IPR000504 GO:0003723
Vifa4g01102 965 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 116 154 IPR016192 GO:0008270|GO:0016787
Vifa4g01102 965 Gene3D Cytidine Deaminase, domain 2 58 212 - -
Vifa4g01102 965 SMART rrm1_1 648 720 IPR000504 GO:0003723
Vifa4g01102 965 SMART rrm1_1 739 811 IPR000504 GO:0003723
Vifa4g01102 965 MobiDBLite consensus disorder prediction 945 965 - -
Vifa4g01102 965 CDD RRM3_I_PABPs 737 816 - -
Vifa4g01102 965 Gene3D - 618 726 IPR012677 -
Vifa4g01102 965 FunFam Polyadenylate-binding protein 641 728 - -
Vifa4g01102 965 Gene3D - 727 832 IPR012677 -
Vifa4g01102 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 647 724 IPR000504 GO:0003723
Vifa4g01102 965 SUPERFAMILY RNA-binding domain, RBD 648 814 IPR035979 GO:0003676
Vifa4g01102 965 MobiDBLite consensus disorder prediction 938 965 - -
Vifa4g01102 965 Gene3D - 320 430 - -
Vifa4g01102 965 Coils Coil 356 390 - -
Vifa4g01102 965 PANTHER KINETOCHORE PROTEIN NDC80 HOMOLOG 321 546 - -
Vifa4g01102 965 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 72 166 IPR002125 -
Vifa4g01102 965 Coils Coil 467 494 - -
Vifa4g01102 965 SUPERFAMILY Cytidine deaminase-like 69 208 IPR016193 GO:0003824
Vifa4g01102 965 FunFam Polyadenylate-binding protein 729 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01102 Vifa-Chr4 330465762 330471582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01102 647 866 Eukaryotic Initiation Factors Gene Family AT2G36660 30.804 1.19e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01102 K11752 - gmx:100786393 374.785