Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01100 ATGGCTTCCAATATTTGTCTCTATTTGTTGTTCTCCTATATTACAACAATCCTTCATTTTATTACATTGGCTCAGTCTGATAATTACATCATTCACATGGATTTATCAGCTATGCCAAAAGTATTCTCAAACCAACATATGTGGTATCATTCCATTCTTTCTCAAGTTACTACTACCAACAATAATCTCAATACAACCTCTTCTAAAATCATTTATACATATAGTAATGCTATGAATGGTTTTAGTGCAAATCTATCACCTCAAGATCATGAGTCTCTCAAAAACTCTCCTGGTTATGTTTCTTCAATACCTGATTTACCATTGAAGCTTGACACAACACACACACCTCAGTTCCTTGGCCTTAATCCCTACAAAGGGGCATGGCCAGCTTCTGAGTATGGCAAAGATATCATTGTTGGTTTAATTGACAGTGGTGTTTGGCCAGAAAGTGAAAGTTTCAAAGATGATGGAATGACAGAAATTCCCTCAAAATGGAAAGGGAAATTATGTCAATTTGATAATTCCGACCATTCATCGTTTTGCAACAAGAAACTCATTGGAGCTAGATACTTCAACAAAGGGTTCTTGGAGACATATCCCGACTTTCATTCACCGAATACAAACACCACGCGCGACGTGGTGGACGGTCATGGAACACATACTTCAACAACTGCAGCTGGAAGCAAAGTTGATGGTGCATCTTTCTTTGGTTACGCAAACGGAACAGCAACAGGAATAGCTTCAATGTCTAGAGTAGCCATGTACAAGGCTATATGGGGGAGCGAAAAAGAGCCAGTTGGAATTTCATCTGATATAATAGCTGCAGTTGATGCTGCATTATCAGATGGTGTCGATGTTCTTTCAATGTCAATAGGCTATGACAATATAGCTTTGTACGACGACGCGGTTGCAATAACCACATTTGCAGCTATGGAAAAAGGTGTTTTTGTGTCTACTTCAGCAGGTAATGGAGGACCTTCATTTCAATCTCTTCACAATGGAGCACCTTGGGTGATAAATGTTGCTGCTGGTACTTCGGATCGTGAATTCCATGGAAATCTTACACTTGGAAATGGAGTTTCACTCACAGGCTTGTCTTCTTATCGAGGAAATTTCTCTGCTACCAATATCCCAGTTGTTTTCAAGGATACGTGCGAAAATTTTCAAGAAGTAATCCCATTTAAGAACAAGATTGTAGTTTGTGAAGACAAGAATGAATCTGTTGTTTCTAGTCAAGTTTCTAACGTGTTTTTAGCAGGAGCTGTTGGAGGTGTTTTCATTTCAAACGTACCACAACAATATCTATCACATCTCTTAAAGAATCCAGTTCCAGCCATCTTTATTAATAAGAAAGATGGAGAAATTGTCAAAGATTACATACAGAAGAACTCTAACTCTAGTAAAATACAAAACATGTCTTTCATGATAACAGTTTTTGGTGCTAAGCCATCACCTAAGGTTGATTCTTATAGTTCAAGAGGACCATCATATAGTTGTCCATATGTGTTGAAACCTGACATTACAGCTCCTGGTACATCAATCTTAGCTGCATGGCCCTCAAAAGTTCCTGTGTTCCTTGGAACTGAAGACTACAACAATTTCAATGTTTTAACTGGAACATCTATGTCATGTCCTCATGTTGCTGGCGTGGCAGCCCTCTTAAAAGGAGCGCATCCAGATTGGAGCCCGGCAGCTATTAGGTCAGCCATGATGACAACATCAGACATACTTGATAATACTAAGCAACCCATCAAAGACATTGGAAACGATAACAAAGATGCAACCCCTTTAGCACTGGGAGCTGGTCATGTTAATCCTAATAGAGCACTTGACCCGGGTCTTGTTTATGATGCTGGTGTACAAGATTACGTTAATCTTCTTTGTGCACTTAACTTCACGCAACAAAACATCACTGCCATTACAAGATCCTCTTCCAACGATTGCTCTAAACCGTCCTTAGATCTTAACTACCCTTCTTTTATCACTTTCGTAGAGGCTGGAAATACTTCTGTAAGGATAACCCGTGAATTTCACAGAACAGTTACCAATGTTGGTGAAGGAAAGTCAACCTATGTTGCTAGCATTACTCCAATTAAAGGGTTCAATATCAGCGTCATACCAGATAAGTTGGTGTTCAATGAGAAGAACATGAAGTTAAGCTTCAAGTTGAAGATTGAAGGCGAAAAAGTGACAAAAAAGAATGAAGTATCTTTTGGATATCTCACTTGGAATGATGGGAAACATGTTGTAAGGAGTCCTATAGTGGTATCTACCCCCAAATTCGACTTGTAG 2292 0.3905 MASNICLYLLFSYITTILHFITLAQSDNYIIHMDLSAMPKVFSNQHMWYHSILSQVTTTNNNLNTTSSKIIYTYSNAMNGFSANLSPQDHESLKNSPGYVSSIPDLPLKLDTTHTPQFLGLNPYKGAWPASEYGKDIIVGLIDSGVWPESESFKDDGMTEIPSKWKGKLCQFDNSDHSSFCNKKLIGARYFNKGFLETYPDFHSPNTNTTRDVVDGHGTHTSTTAAGSKVDGASFFGYANGTATGIASMSRVAMYKAIWGSEKEPVGISSDIIAAVDAALSDGVDVLSMSIGYDNIALYDDAVAITTFAAMEKGVFVSTSAGNGGPSFQSLHNGAPWVINVAAGTSDREFHGNLTLGNGVSLTGLSSYRGNFSATNIPVVFKDTCENFQEVIPFKNKIVVCEDKNESVVSSQVSNVFLAGAVGGVFISNVPQQYLSHLLKNPVPAIFINKKDGEIVKDYIQKNSNSSKIQNMSFMITVFGAKPSPKVDSYSSRGPSYSCPYVLKPDITAPGTSILAAWPSKVPVFLGTEDYNNFNVLTGTSMSCPHVAGVAALLKGAHPDWSPAAIRSAMMTTSDILDNTKQPIKDIGNDNKDATPLALGAGHVNPNRALDPGLVYDAGVQDYVNLLCALNFTQQNITAITRSSSNDCSKPSLDLNYPSFITFVEAGNTSVRITREFHRTVTNVGEGKSTYVASITPIKGFNISVIPDKLVFNEKNMKLSFKLKIEGEKVTKKNEVSFGYLTWNDGKHVVRSPIVVSTPKFDL 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01100 763 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Vifa4g01100 763 PRINTS Subtilisin serine protease family (S8) signature 538 554 IPR015500 -
Vifa4g01100 763 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Vifa4g01100 763 Pfam Subtilase family 134 582 IPR000209 GO:0006508|GO:0008236
Vifa4g01100 763 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 29 756 IPR045051 -
Vifa4g01100 763 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 111 IPR037045 -
Vifa4g01100 763 Gene3D - 347 479 - -
Vifa4g01100 763 CDD Peptidases_S8_3 108 575 IPR034197 -
Vifa4g01100 763 FunFam Subtilisin-like protease SBT1.9 18 111 - -
Vifa4g01100 763 Pfam PA domain 383 454 IPR003137 -
Vifa4g01100 763 SUPERFAMILY Subtilisin-like 110 614 IPR036852 GO:0004252|GO:0006508
Vifa4g01100 763 CDD PA_subtilisin_like 353 465 - -
Vifa4g01100 763 ProSiteProfiles Serine proteases, subtilase domain profile. 107 610 - -
Vifa4g01100 763 Pfam Peptidase inhibitor I9 29 110 IPR010259 -
Vifa4g01100 763 Gene3D Peptidase S8/S53 domain 136 623 IPR036852 GO:0004252|GO:0006508
Vifa4g01100 763 Gene3D - 627 759 - -
Vifa4g01100 763 Pfam Fibronectin type-III domain 654 756 IPR041469 -
Vifa4g01100 763 ProSitePatterns Serine proteases, subtilase family, serine active site. 539 549 IPR023828 -
Vifa4g01100 763 FunFam Subtilisin-like protease SBT1.5 136 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01100 Vifa-Chr4 325728505 325730796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01100 1 745 Subtilisin-like Serine Gene Family AT5G67090 44.037 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01100 - - gmx:100786751 943.34