Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01099 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTCCCTCCTGGATTCAGGTTTCATCCAACTGAAGAAGAACTTCTTCAATACTATTTGAGGAAAAAAGTGTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGTCACAAAGATAAGAAGTATCCAACCGGGACGCGAACCAATCGCGCCACGGCTGCTGGGTTCTGGAAAGCCACCGGGCGTGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTTTACAAGGGTCGCGCCCCTCATGGCCAAAAATCCGATTGGATCATGCACGAATATAGACTAGACGATAATACCACCACCAGCGACGCTAATTTGGTGTCGAATGTGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTGAAAACCCTAGACAGCCCATTAGGCTCTGGAGAGGGAAGAAGAAGCCATCATTTGTTTGATAATTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGAGGTGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAACAATAATTATGGAAGGTTTACAAGGCCTTATGAAACTAGCCTCAACAACAATGGTGGTTATAATAATAATGAAAGGTTCATGAAACTTCCAAGTTTAGAGAGTCCAAAATCAACAAGCATGGAGAACAATGAGAACAACAATGAAGGGTACCATGCAATTATTCAAGTGGATGTGGCTAATGATCATCATCATCAACACCATAACAACATGGTTAATAATCCATTAGAAGCATCATCATCATCAATGGTTATAGCATCATGTGGTGATGGTGGTCTTGCTAATTGGGTAGCTTTGGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAAACCTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCAACCCTTAGATCTTCTTCATCAACTTCATCTCTATCAACACACGTTAGAGCAACTACTTCTACTACTACTTACATTAGTCCCTCGCATGAATATGCGAGTGAGATTGATCTTTGGAACTTCGCCCGATCAACTTCTTTATTATTGTCATCTTCTGAACCACTCTGCCATGTCTCAAATACGTCAGCATGA 1287 0.4017 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTSDANLVSNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGEGRRSHHLFDNCDEGALEQILQQMGRGGCKEENYEANYNNNNYGRFTRPYETSLNNNGGYNNNERFMKLPSLESPKSTSMENNENNNEGYHAIIQVDVANDHHHQHHNNMVNNPLEASSSSMVIASCGDGGLANWVALDRLVASQLNGQTETSRQLACFNDPTMGYCTNDHDLQLPTLRSSSSTSSLSTHVRATTSTTTYISPSHEYASEIDLWNFARSTSLLLSSSEPLCHVSNTSA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01099 428 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Vifa4g01099 428 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Vifa4g01099 428 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Vifa4g01099 428 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Vifa4g01099 428 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 290 - -
Vifa4g01099 428 FunFam NAC domain-containing protein 24 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01099 Vifa-Chr4 324492599 324494177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01099 1 428 NAC Transcription Factor Family AT2G46770 53.288 1.01e-138 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa4g01099 NAM 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01099 - - gmx:100793308 580.096