Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01098 ATGTCTCAACAAAGACAAGCTCATACGATGAGTGGTGGTAACAACCAAGATCAATATAGTGACACAACATTTACCAAAATTTTTGTTGGTGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAGAAGGTATTTTGAGCAATTTGGAGAGATCTTAGAAGCTGTTGTTATCACAGATAAGTATACTGGGAGATCTAAAGGTTATGGTTTTGTGACATTTAAGGATCCTGAGGCAGCTATAAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGTGCTAATAAGAATAGATCAGTAACTCTTCAACATGGAAGGTTTAGGCCTCCACATGGAGTGATGGCACCAGTTCCTTATCATGGATCTTCTTCATCCACAATTTTCCATCAACCTACCACTAGGCAGTACTCATTTCCTTATTCAGCATATGGATATTCTGGATATTCACAAGACACATTGTATCCTCCGAACTATTACAATGTGTATGGAGTTCAGCAATATTCACCGTACTACCCATCTATTGGAGGTGCTGCTGGAACAATGGGGTTGGTTCAAAATATGTACCCTTACTATGGACAATATGCACAAAATATCCATGGTCCTGGTTTTGGAGTTCAATACCCTCAAATGACACAGATTCCGGTTTTGTCTCAGAATTATGGTTCCACTGGAATATTGTCATTCCCTTCTTCAGCAGCATTGCCAACCATTAGTGCAGCAACCGTAGCCGCCGCATCCGCAACTACTACGACAGCGACAGCCGTGGTAATTACCGAGGTTACCGGTTCACAAGCTACTGAAACAACAGAACAACAACATTCAACAACTTGA 861 0.4135 MSQQRQAHTMSGGNNQDQYSDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSVTLQHGRFRPPHGVMAPVPYHGSSSSTIFHQPTTRQYSFPYSAYGYSGYSQDTLYPPNYYNVYGVQQYSPYYPSIGGAAGTMGLVQNMYPYYGQYAQNIHGPGFGVQYPQMTQIPVLSQNYGSTGILSFPSSAALPTISAATVAAASATTTTATAVVITEVTGSQATETTEQQHSTT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01098 286 Gene3D - 1 115 IPR012677 -
Vifa4g01098 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Vifa4g01098 286 CDD RRM_RBM24_RBM38_like 25 100 - -
Vifa4g01098 286 SMART rrm1_1 26 98 IPR000504 GO:0003723
Vifa4g01098 286 PANTHER BOULE-RELATED 9 255 - -
Vifa4g01098 286 SUPERFAMILY RNA-binding domain, RBD 13 113 IPR035979 GO:0003676
Vifa4g01098 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01098 Vifa-Chr4 323300193 323301740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01098 21 101 C2H2 Transcription Factor Family AT2G19380 43.210 3.62e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01098 - - pvu:PHAVU_010G118600g 399.438