Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01097 ATGGGGAAAGGAAGTAGTTCATGGTTAACTGCTGTTAAAAGGGCATTTAGATCTCCAACAAAAGATAGTGAGAAAAGAAGTGGTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAGAGAAAAAAGAAGATGGATTTTTAGAAAACCTGTTGTGAATCATGAAACTGTAAGCAATAATACTCAACAAAGTACACCAACAAAGTTGAAGAATGATGTTGTTGTTGCTACTGCTGCTGCAAGTGTGGCTTCTTCAAGAGCAGATCAAGATGAGAAGCATGCTCTTGCTGTGGCTATGGCTACTGCTGAGGCAGCAAGAGCCACTGCTCAAGCTGCTATGGAAGTTGCAAGGTTGACTAAGCCGGCGAATTATGCTAGAGAGCATTGTGCTGCTGTTGTGATACAAACTTCTTTCAGAGGCTATTTGGCAAGAAGAGCGCTTCGAGCACTTAAGGGTTTGGTGAAGTTGCAAGCATTAGTGAGAGGTCACAATGTTAGGAAACAAGCGAAAATGACACTTAGGTGCATGCAAGCTCTTGTTAGAGTGCAAGCAAGAGTTCTTGACCAAAGGGTAAGGTCTACTTCACATGATGGAAGTAGAAAATCAACCTTTAGTGACACGGCTAGTGTTTGGGATTCGCGGTATCTTCAAGACATTTCAGACAGAAAATCATTGTCGAGAGAAGGAAGTAGTGTTGCAGATGATTGGGATGATCGTCCACACACAGTTGAAGAAGTTAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGAAAAGTCATTGTCCCAAGCTTTTTCACAGCAGATTTGGAGAAATGGAAGAACATCATCAATTGGAAATGAAGATGAACTTGAAGAGAGACCAAAATGGTTAGATAGATGGATGGCTACAAAACCATGGGAGAATAGAGGGAGAGCTTCAACTGATCAAAGAGACTGTATCAAGACAGTAGAAGTTGACACATCTCAACCTTATTCATATCTAGGAACAAACTACAGAAGATCACATCCAAATTACCAATACAATCCACACCACCAACCACAAAGACACTCCATTGCTTCACCACTCCATAGAACACACCAAAATGGATCCCTTAACCAATCCGTAACCACTCCGTCTCCTGCCAAATCAAGACCTATTCAAGTCCGGTCCTCGAGTCCTCGTTGTGCTAGAGAAGATAGAAGCTACCACCACACATCTCAAACACCAAGCTTAAGGTCTAACTACCATTACAATGGAAACTTGTACCAAAATAGTAGTAGGGTTGGAACAAGCAACTGTGTTTCCAATGCTACACCTACATTGCCTAATTACATGCAAGCGACCGAGTCTGCTAAGGCTCGGATTCGCTCGCAGAGTGCGCCGAGGCAAAGGCCATCGACGCCAGAGCGAGATAGATCAGGATCAGTAAGGAAAGGCCTTTCTTTCCCTGCTCCTGATCCTTACAATGTAGGAGGAGTTGGTTATGGAAATTATGGACATAGTTTAAGAAGTCCTAGTTTCAAGAGTGTGAATGTAACATCACATTTTGGGTCAGAGCAACATTCTAACTACTCTTCATGTTGCACCGAGAGTCTCGGTGGCGAGGTTTCTCCTTCTTCGACCGGTGACCTTAGAAGGTGGTTGAGATGA 1650 0.4309 MGKGSSSWLTAVKRAFRSPTKDSEKRSGRRREDCDQEEDEEKREKRRWIFRKPVVNHETVSNNTQQSTPTKLKNDVVVATAAASVASSRADQDEKHALAVAMATAEAARATAQAAMEVARLTKPANYAREHCAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVRSTSHDGSRKSTFSDTASVWDSRYLQDISDRKSLSREGSSVADDWDDRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDCIKTVEVDTSQPYSYLGTNYRRSHPNYQYNPHHQPQRHSIASPLHRTHQNGSLNQSVTTPSPAKSRPIQVRSSSPRCAREDRSYHHTSQTPSLRSNYHYNGNLYQNSSRVGTSNCVSNATPTLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVRKGLSFPAPDPYNVGGVGYGNYGHSLRSPSFKSVNVTSHFGSEQHSNYSSCCTESLGGEVSPSSTGDLRRWLR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01097 549 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Vifa4g01097 549 Pfam Protein of unknown function (DUF4005) 392 496 IPR025064 -
Vifa4g01097 549 FunFam IQ-domain 11 129 180 - -
Vifa4g01097 549 Pfam IQ calmodulin-binding motif 131 151 IPR000048 GO:0005515
Vifa4g01097 549 Pfam IQ calmodulin-binding motif 157 173 IPR000048 GO:0005515
Vifa4g01097 549 MobiDBLite consensus disorder prediction 448 464 - -
Vifa4g01097 549 MobiDBLite consensus disorder prediction 1 46 - -
Vifa4g01097 549 SMART iq_5 152 173 IPR000048 GO:0005515
Vifa4g01097 549 SMART iq_5 129 151 IPR000048 GO:0005515
Vifa4g01097 549 MobiDBLite consensus disorder prediction 517 549 - -
Vifa4g01097 549 MobiDBLite consensus disorder prediction 364 390 - -
Vifa4g01097 549 MobiDBLite consensus disorder prediction 448 488 - -
Vifa4g01097 549 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Vifa4g01097 549 Gene3D - 129 183 - -
Vifa4g01097 549 PANTHER IQ-DOMAIN 5-RELATED 1 484 - -
Vifa4g01097 549 MobiDBLite consensus disorder prediction 364 419 - -
Vifa4g01097 549 MobiDBLite consensus disorder prediction 17 46 - -
Vifa4g01097 549 MobiDBLite consensus disorder prediction 517 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01097 Vifa-Chr4 322654879 322657683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01097 1 549 IQD Protein Family AT1G01110 55.789 3.21e-177 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01097 - - gmx:100786729 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01097 4 322654879 322657683 Vifa4g01097 4 322654879 322657683 ECH