Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01096 ATGGGGAAAGGAAGTAGTTCATGGTTAACTGCTGTTAAAAGGGCATTTAGATCTCCAACAAAAGATAGTGAGAAAAGAAGTGGTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAAGAGAGAAAAAAGAAGATGGATTTTTAGAAAACCTGTTGTGAATCATGAAACTGTAAGCAATAATACTCAACAAAGTACACCAACAAAGTTGAAGAATGATGTTGTTGTTGCTACTGCTGCTGCAAGTGTGGCTTCTTCAAGAGCAGATCAAGATGAGAAGCATGCTCTTGCTGTGGCTATGGCTACTGCTGAGGCAGCAAGAGCCACTGCTCAAGCTGCTATGGAAGTTGCAAGGTTGACTAAGCCGGCGAATTATGCTAGAGAGCATTGTGCTGCTGTTGTGATACAAACTTCTTTCAGAGGCTATTTGGCAAGAAGAGCGCTTCGAGCACTTAAGGGTTTGGTGAAGTTGCAAGCATTAGTGAGAGGTCACAATGTTAGGAAACAAGCGAAAATGACACTTAGGTGCATGCAAGCTCTTGTTAGAGTGCAAGCAAGAGTTCTTGACCAAAGGGTAAGGTCTACTTCACATGATGGAAGTAGAAAATCAACCTTTAGTGACACGGCTAGTGTTTGGGATTCGCGGTATCTTCAAGACATTTCAGACAGAAAATCATTGTCGAGAGAAGGAAGTAGTGTTGCAGATGATTGGGATGATCGTCCACACACAGTTGAAGAAGTTAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGAAAAGTCATTGTCCCAAGCTTTTTCACAGCAGATTTGGAGAAATGGAAGAACATCATCAATTGGAAATGAAGATGAACTTGAAGAGAGACCAAAATGGTTAGATAGATGGATGGCTACAAAACCATGGGAGAATAGAGGGAGAGCTTCAACTGATCAAAGAGACTGTATCAAGACAGTAGAAGTTGACACATCTCAACCTTATTCATATCTAGGAACAAACTACAGAAGATCACATCCAAATTACCAATACAATCCACACCACCAACCACAAAGACACTCCATTGCTTCACCACTCCATAGAACACACCAAAATGGATCCCTTAACCAATCCGTAACCACTCCGTCTCCTGCCAAATCAAGACCTATTCAAGTCCGGTCCTCGAGTCCTCGTTGTGCTAGAGAAGATAGAAGCTACCACCACACATCTCAAACACCAAGCTTAAGGTCTAACTACCATTACAATGGAAACTTGTACCAAAATAGTAGTAGGGTTGGAACAAGCAACTGTGTTTCCAATGCTACACCTACATTGCCTAATTACATGCAAGCGACCGAGTCTGCTAAGGCTCGGATTCGCTCGCAGAGTGCGCCGAGGCAAAGGCCATCGACGCCAGAGCGAGATAGATCAGGATCAGTAAGGAAAGGCCTTTCTTTCCCTGCTCCTGATCCTTACAATGTAGGAGGAGTTGGTTATGGAAATTATGGACATAGTTTAAGAAGTCCTAGTTTCAAGAGTGTGAATGTAACATCACATTTTGGGTCAGAGCAACATTCTAACTACTCTTCATGTTGCACCGAGAGTCTCGGTGGCGAGGTTTCTCCTTCTTCGACCGGTGACCTTAGAAGGTGGTTGAGATGA 1653 0.4307 MGKGSSSWLTAVKRAFRSPTKDSEKRSGRRREDCDQEEDEEKKREKRRWIFRKPVVNHETVSNNTQQSTPTKLKNDVVVATAAASVASSRADQDEKHALAVAMATAEAARATAQAAMEVARLTKPANYAREHCAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVRSTSHDGSRKSTFSDTASVWDSRYLQDISDRKSLSREGSSVADDWDDRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDCIKTVEVDTSQPYSYLGTNYRRSHPNYQYNPHHQPQRHSIASPLHRTHQNGSLNQSVTTPSPAKSRPIQVRSSSPRCAREDRSYHHTSQTPSLRSNYHYNGNLYQNSSRVGTSNCVSNATPTLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVRKGLSFPAPDPYNVGGVGYGNYGHSLRSPSFKSVNVTSHFGSEQHSNYSSCCTESLGGEVSPSSTGDLRRWLR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01096 550 SMART iq_5 153 174 IPR000048 GO:0005515
Vifa4g01096 550 SMART iq_5 130 152 IPR000048 GO:0005515
Vifa4g01096 550 Gene3D - 130 184 - -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 518 550 - -
Vifa4g01096 550 ProSiteProfiles IQ motif profile. 155 182 IPR000048 GO:0005515
Vifa4g01096 550 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Vifa4g01096 550 Pfam IQ calmodulin-binding motif 132 152 IPR000048 GO:0005515
Vifa4g01096 550 Pfam IQ calmodulin-binding motif 158 174 IPR000048 GO:0005515
Vifa4g01096 550 MobiDBLite consensus disorder prediction 1 46 - -
Vifa4g01096 550 FunFam IQ-domain 11 130 181 - -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 449 465 - -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 365 391 - -
Vifa4g01096 550 PANTHER IQ-DOMAIN 5-RELATED 1 485 - -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 518 539 - -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 449 489 - -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 17 46 - -
Vifa4g01096 550 Pfam Protein of unknown function (DUF4005) 393 497 IPR025064 -
Vifa4g01096 550 MobiDBLite consensus disorder prediction 365 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01096 Vifa-Chr4 322654879 322657683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01096 1 550 IQD Protein Family AT1G01110 56.743 9.95e-178 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01096 - - gmx:100786729 812.372