Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01094 ATGATGAGTAATAAGGTACCGTTACCTCGTACTCGAGTTGGGAAGTATCAGTTAGGGAAGACGATTGGAGAAGGAAGCTTTGCGAAGGTGAAATTGGCGAAGAATGTTGAGAATGGTGATTATGTTGCTATCAAGATTCTTGATCGTAATCATGTGCTTCGACATAATATGATGGATCAGTTGAAAAGAGAAATTTCAGCGATGAAGATGATTAATCATCCAAACGTTGTCAAAATATTTGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTCTTGGAATTGGTTAGTGGAGGAGAACTATTTGATAAAATTGCTACAAATGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAACTAATCAATGCGGTTGATTACTGCCATAGTAGAGGAGTCTATCACAGAGATTTGAAGCCAGAGAATCTTATGTTGGACACAAATAGTGTTCTTAAAGTTTCAGATTTTGGATTAAGTACATATTCGCAACAGGAGGGTGAGCTTCTCCGCACGGCGTGTGGAACACCGAATTACGTTGCACCTGAGGTGATTAATGATAGAGGTTATGTTGGTTCTACATCTGATATATGGTCCTGTGGAGTTATTCTCTTTGTACTTATGGCCGGGTACTTGCCGTTCGACGAGCCGAATCAAATTGCACTTTATAGAAAAATTGGTAGGGCTGAGTTCACATGTCCGCCCTGGTTTTCGCCCGAGGCAAAGAAACTACTCAAGGCTATACTTAATCCAAACCCTCTCACGAGGATAAAAATTCCAGAACTCTTGAAAGATGAATGGTTCAAAAAAGCATACAAGCCAGCATCTTTTACCGAGGAAGATGTCAATGTAGACGATGTTGCTGCTGCTTTCAACAATTCAAAGGAAAATCTTGTGACAGAGACGAAAGAGAAACCCGTGTCCATGAATGCTTTCGAGCTTATTTCTAGATCAGAAAGCTTCAATCTTGACAATTTATTCGAGAAGCAAAAGGGAGTTGTAAAGCGCGAAACTCATTTCACTTCACAACGTCCTGCAAATGAAATCATGTCTAAGATTGAGGAGGCTGCAAAACCTCTCGGATTTAATGTTCACAAGCGAAATTACAAGATGAAGCTGCAAGGTGATAAAAGTGGAAGGAAAGGCCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCACCCTCCCTACATATGGTGGAGCTGCGAAAGACGGGCGGCGACACACTTGAGTTTAACAAATTCTACAAAATATTTTCATCAGGGTTAGATGACATAGTGTGGCACAATGACAAAAAATAA 1305 0.4031 MMSNKVPLPRTRVGKYQLGKTIGEGSFAKVKLAKNVENGDYVAIKILDRNHVLRHNMMDQLKREISAMKMINHPNVVKIFEVMASKTKIYIVLELVSGGELFDKIATNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLMLDTNSVLKVSDFGLSTYSQQEGELLRTACGTPNYVAPEVINDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPNQIALYRKIGRAEFTCPPWFSPEAKKLLKAILNPNPLTRIKIPELLKDEWFKKAYKPASFTEEDVNVDDVAAAFNNSKENLVTETKEKPVSMNAFELISRSESFNLDNLFEKQKGVVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFNKFYKIFSSGLDDIVWHNDKK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01094 434 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01094 434 Gene3D Transferase(Phosphotransferase) domain 1 96 297 - -
Vifa4g01094 434 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 415 - -
Vifa4g01094 434 FunFam Non-specific serine/threonine protein kinase 8 95 - -
Vifa4g01094 434 Gene3D Phosphorylase Kinase; domain 1 6 95 - -
Vifa4g01094 434 Pfam NAF domain 307 367 IPR004041 GO:0007165
Vifa4g01094 434 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Vifa4g01094 434 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vifa4g01094 434 ProSiteProfiles Protein kinase domain profile. 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01094 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vifa4g01094 434 CDD CIPK_C 311 426 - -
Vifa4g01094 434 FunFam Non-specific serine/threonine protein kinase 9 308 - -
Vifa4g01094 434 SUPERFAMILY Protein kinase-like (PK-like) 13 280 IPR011009 -
Vifa4g01094 434 Gene3D Kinase associated domain 1, KA1 304 430 - -
Vifa4g01094 434 SMART serkin_6 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01094 434 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01094 Vifa-Chr4 321747418 321750546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01094 6 432 CBL-interacting serine-threonine protein kinases AT1G01140 74.483 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa4g01094 Pkinase 3.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01094 - - gmx:100794136 773.467