Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01086 ATGGAAGATTTTATCATCTCACCTTCATCATCTTCTTCTATGATACAAAACTCTTTACCACAAACATCTTCCCTTCAACAAAAGCTTCAACTTTTGCTCCAATCTCAATCCGACAATTGGGTCTATGCCATTTTGTGGCAAACAACAAACGATGAAAAAGGTAACCCTTTCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAAAGAAACAACAACTTCAAACAAACCATACGACACAGACACAAATACAGACAAGAACACGTCTACAAACGGCGATGCGGAATGGTTCTACGTCATGTCGTTGACTCGAAGATTTTCCGTCGGTAATTCTTCTTCCATTTCTTTACCTGGTAAAGCTTTTGCCTTAGATTCTGTTCTTTGGTTGAATAGCAAACAAGAGCTTCAATTTTATAACTGTGAGAGATCCAACGAAGCACACCTGCACGGAATCGAAACCTTAATTTGTATTCCAACAACTAACGGCGTTGTCGAAATGGGTTCGTACGAAAACATCCTACAAAACTGGAACCTCGTAAACCAAGCTAAATCCATATTCCAAACATCCTCGTCAGAATCAAACTCAATCTCAAAACCAGATCTTCTTCCCACTAACCCACTTGACAAAATCCAAACCTTCGACCAAAACATCTCATTCTCCGACATCGGTTTCATCTCCGGCACCGGCGAAGAAACCCAAGAGACACAAAAAACAATGAACAAAAAACCACAAAAAAAACACAACATTGTTTCATCATGTCACATAGATTCTGAACATTCTGATTCAGAATATTGTCCAGAATTAGCAACACCACCAACAATAACACCGAAGAAGAGAGGAAGAAAACCATTAACCGGAATACCAACTCCGATAAACCATGTAGAAGCCGAGAGACAAAGGAGAGAGAAACTAAACCATAGATTCTACGCATTAAGAGCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCTTCACTGTTATCAGACGCAGTAGATTACATCAACGAGTTAAAAGCAAAAGTCGAAGAATTCGAATCCGAGAATCAAAAGGAACCAAAGAAACCGAAGACGGAAGCAATTGAAAGTACAGTAACAGCAACTTCAACTGTGGTGGACCAAAAAAGAACTTGTGTTATTGGTTTGGAGATTGAAGTGAAGATTATAGGCAGTGATGCTATGGTGAGAGTTCAATCTGAGAATGTTAATCACCCTGGAGCAAGATTAATGAGTGTGTTTAAGGATTTGGAGTTTCAGGTTCATCATGCGACTATATCATGTTTCAATGAAATTATGGTTCAGGATGTTGTGGTTGTTCAAGTTCCCGATGAGATGAGGAATGAAGAGAGTCTTAGATCTGCAATTAGAATGAGATTGGAACATGAATGA 1386 0.3925 MEDFIISPSSSSSMIQNSLPQTSSLQQKLQLLLQSQSDNWVYAILWQTTNDEKGNPFLSWGEGHFQGTKETTTSNKPYDTDTNTDKNTSTNGDAEWFYVMSLTRRFSVGNSSSISLPGKAFALDSVLWLNSKQELQFYNCERSNEAHLHGIETLICIPTTNGVVEMGSYENILQNWNLVNQAKSIFQTSSSESNSISKPDLLPTNPLDKIQTFDQNISFSDIGFISGTGEETQETQKTMNKKPQKKHNIVSSCHIDSEHSDSEYCPELATPPTITPKKRGRKPLTGIPTPINHVEAERQRREKLNHRFYALRAVVPNVSKMDKASLLSDAVDYINELKAKVEEFESENQKEPKKPKTEAIESTVTATSTVVDQKRTCVIGLEIEVKIIGSDAMVRVQSENVNHPGARLMSVFKDLEFQVHHATISCFNEIMVQDVVVVQVPDEMRNEESLRSAIRMRLEHE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01086 461 SMART finulus 294 343 IPR011598 GO:0046983
Vifa4g01086 461 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 186 IPR025610 -
Vifa4g01086 461 Gene3D - 290 353 IPR036638 GO:0046983
Vifa4g01086 461 PANTHER MYC 11 455 IPR045084 GO:0003700|GO:0006355
Vifa4g01086 461 MobiDBLite consensus disorder prediction 62 89 - -
Vifa4g01086 461 Coils Coil 327 354 - -
Vifa4g01086 461 MobiDBLite consensus disorder prediction 260 289 - -
Vifa4g01086 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 350 IPR036638 GO:0046983
Vifa4g01086 461 MobiDBLite consensus disorder prediction 65 89 - -
Vifa4g01086 461 CDD bHLH_AtAIB_like 286 363 - -
Vifa4g01086 461 Pfam Helix-loop-helix DNA-binding domain 292 337 IPR011598 GO:0046983
Vifa4g01086 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01086 Vifa-Chr4 318531643 318533028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01086 1 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 31.843 8.47e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01086 bHLH-MYC_N 7.3e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01086 - K13422 gmx:100804965 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01086 4 318531643 318533028 Vifa4g01086 4 318531643 318533028 ECH