Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01083 ATGTTTGAACTAGAAACTATGGAATATGGTCAATATAGTTGTTATTCAGCAGAAGCAGAAGCAGCAGAGGAAGAAGCTGCTTATGCGACTAGCAGCACATCTTCTATGATGAGGAAGAAGAAGAACAAGAATACAAAAAGGTTTAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACTGAGACCAGACTTGAACCAAGAAAGAAGCTGCAGTTGGCTAGAGAGCTTGGGTTGCAGCCAAGACAGGTTGCTATATGGTTTCAAAATAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAGTACAATAAACTTCAAAATAGTTACAATAGTTTGGCCTCAAGATTCGAATCAATGAAGAAGGAAAAACAAACATTACTTATACAGTTGCAGAAGCTGAATGATCTGATACAGAAGCCAATAGAGCAAAGTCAGAGTTCATCACAAGTTAAAGAAGCGAACAGCATGGAAAGTGAATCAGAAAACGGAGGAACAATCAAATGTGAGGGTGAGGTGAAACCAAGAACTTCAACGGAAAGATCAGAGCATGTTGTTGATGTTGTATCAGATGATGACACAAGCATAAAAGTTGAGTATTTTGGGCTTGAAGATGAGCATGGACTAATGAGTTTTGCTGAACATGGTGATGGATCATTAACTTCACCTGAAAATTGGAGTGGTTTTGAAACAAATGATCTGTTAGGAGAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA 756 0.3783 MFELETMEYGQYSCYSAEAEAAEEEAAYATSSTSSMMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNSLASRFESMKKEKQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESESENGGTIKCEGEVKPRTSTERSEHVVDVVSDDDTSIKVEYFGLEDEHGLMSFAEHGDGSLTSPENWSGFETNDLLGESSCDYQWWDFWS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01083 251 MobiDBLite consensus disorder prediction 25 48 - -
Vifa4g01083 251 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 180 IPR045224 GO:0003700
Vifa4g01083 251 Pfam Homeobox associated leucine zipper 99 140 IPR003106 GO:0006355|GO:0043565
Vifa4g01083 251 FunFam Homeobox-leucine zipper protein ATHB-7 27 99 - -
Vifa4g01083 251 Gene3D - 34 108 - -
Vifa4g01083 251 MobiDBLite consensus disorder prediction 144 185 - -
Vifa4g01083 251 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Vifa4g01083 251 CDD homeodomain 48 100 IPR001356 GO:0003677
Vifa4g01083 251 SUPERFAMILY Homeodomain-like 29 101 IPR009057 -
Vifa4g01083 251 MobiDBLite consensus disorder prediction 167 185 - -
Vifa4g01083 251 MobiDBLite consensus disorder prediction 144 165 - -
Vifa4g01083 251 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Vifa4g01083 251 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Vifa4g01083 251 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Vifa4g01083 251 Pfam Homeodomain 46 97 IPR001356 GO:0003677
Vifa4g01083 251 Coils Coil 91 139 - -
Vifa4g01083 251 SMART HOX_1 39 103 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01083 Vifa-Chr4 314962383 314963391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01083 47 251 Homeobox Transcription Factor Family AT3G61890 53.589 3.58e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g01083 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01083 K09338 - gmx:100811208 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01083 4 314962383 314963391 Vifa4g01083 4 314962383 314963391 ECH