Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01079 ATGTCTACCCACATTGATAACCTCTGGATATTCGCCCTAGCTTCAAAATGCACACAAGAGAACATTGTTTACTCTCTTTTGATCATGGCTTTACTCTGGCTAACCATGAATTTCTTTTACTGGTCTCACCCTGGTGGTCCTGCTTGGGGCAAGTACTATTATTCCAATTCCAACAACAACAAAAACAAAAACAACCTTAAATCCTCTCCTATGTTCATTCCTGGTCCTAACGGTTACCCTCTAATTGGAAGCATGAACCTTATGTCTTCTTCACTCGCTCACCACCGTCTCGCTTCCGCCGCAAAAACATGCAAAGCAACTAGACTCATGGCTTTCAGTCTCGGTGATACACGTGCAATAATCACGTCTAACCCTGATGTAGCCAAAGAGATTCTCCACAGCTCCGTTTTCGCTGATCGTCCTATCAAAGAATCAGCTTACTCTCTCATGTTCAATAGAGCCATAGGTTTCGCACCCTACGGTGTTTACTGGCGAACCCTTCGAAAAATCTCAACCAACCATCTTTTCTCACCCATGCAAATCAAATCATCTGGGCCGCAACGTACTGAAATTGCCACTCAGATGATTGATTTGTTCCGAAGCCGCGGGTTCGGTCCGGTTCGTGATGTTTTGAAAAAAGCATCGCTGAATAACATGATGTGCTCTGTTTTTGGACAGAGGTTTAAGATTGATCAAGTTAATGAGAGAATGATGGAACTTAGTGGGTTGGTTGAACAAGGTTATGATTTGTTGGGTTCTCTTAATTGGGGTGATCATCTTCCTTTTTTGAAAGATTTTGATGTTCAAAAAATCCGGTTCAATTGTGCTAATTTAGTACCTAAAGTGAACCGGTTCGTTGGTTCAATTATCTCCGACCACCGAGCCGACAAACACCAAACCAACATGGATTTCGTTCATGTTCTGCTCTCTCTTCAAGAACCTGATAAATTGTCTGAATCCGACATGATCGCTGTACTCTGGGAAATGATATTTAGAGGAACCGACACGGTTGCGGTTTTGATAGAGTGGATACTAGCGAGGATGGTGCTACATCCTGACGTGCAAAGGAAGGTACAGATGGAGCTTGACGCGGTGGCGAGTGGAGGTGCATGTGGTGTTACGGAGGAGGACATGGCGGCGACGGTGTATTTACAGGCGGTTATAAAGGAGGTTTTAAGGTTGCATCCACCAGGCCCACTACTTTCGTGGGCCCGACTGGCCATCACCGATACGACAATTGATGGGTATCACGTGCCAGCTGGGACGACAGCTATGGTGAACATGTGGGCCATAGCTAGGGACCCGGAAGTATGGGGGGACCCGCTTGAATTTAAGCCCGAGAGGTTTATGAATGAAGATGGTGCTGAGTTTTCGGTTCTCGGGTCGGATCTTAGGTTGGCTCCGTTCGGGTCGGGTCGAAGAAGTTGCCCCGGGAAGAATTTGGGTTTGGCTACTGTGACTTATTGGGTGGCTAAGCTTTTGCATGAGTTTGAATGGAAGCCGTTGGATGAAATGAACGGTGTGGATTTAACAGAGGTGCTTAGGCTTTCTTGTGAAATGGCGAATCCTCTTGATGTGAAAATGGTCCCAAGGCGTTTAAGTTAA 1605 0.4586 MSTHIDNLWIFALASKCTQENIVYSLLIMALLWLTMNFFYWSHPGGPAWGKYYYSNSNNNKNKNNLKSSPMFIPGPNGYPLIGSMNLMSSSLAHHRLASAAKTCKATRLMAFSLGDTRAIITSNPDVAKEILHSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRKISTNHLFSPMQIKSSGPQRTEIATQMIDLFRSRGFGPVRDVLKKASLNNMMCSVFGQRFKIDQVNERMMELSGLVEQGYDLLGSLNWGDHLPFLKDFDVQKIRFNCANLVPKVNRFVGSIISDHRADKHQTNMDFVHVLLSLQEPDKLSESDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPDVQRKVQMELDAVASGGACGVTEEDMAATVYLQAVIKEVLRLHPPGPLLSWARLAITDTTIDGYHVPAGTTAMVNMWAIARDPEVWGDPLEFKPERFMNEDGAEFSVLGSDLRLAPFGSGRRSCPGKNLGLATVTYWVAKLLHEFEWKPLDEMNGVDLTEVLRLSCEMANPLDVKMVPRRLS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01079 534 SUPERFAMILY Cytochrome P450 73 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 427 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Vifa4g01079 534 FunFam Cytochrome P450 78A5 65 531 - -
Vifa4g01079 534 Gene3D Cytochrome P450 66 533 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 Pfam Cytochrome P450 74 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g01079 534 CDD CYP78 105 524 - -
Vifa4g01079 534 PANTHER CYTOCHROME P450 78A7-RELATED 1 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01079 Vifa-Chr4 312569436 312571171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01079 1 532 Cytochrome P450 AT2G46660 63.216 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01079 K20619 - gmx:100798388 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01079 4 312569436 312571171 Vifa4g01079 4 312569436 312571171 ECH