Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01068 ATGACGGTTGTAGATTTGTTTACTTCTGGTCCTACTGCAACTGCTATTTCTCAAATCATAGATACCATTGGTGAGTTTCTGTTCTATGCTAGTGATGTGCTTGTGAATAAGGATAGTTTTAAGGAGCTTGGTGCTTATTTGGAAAGAATTATGCCGGTTTTGAAAGAATTGAGGAAAGAAAAAGTGAGTGATTCTGAGGCATTCAACCATGCTATTGAGGTTATGAATCGCGAAACGAAGGATGCGAAGTTACTTGCTCTAGAATGTAGCAAGAAGAGCAAGTTTTATCTGTTGATGAATTGCAGGTCTATTGTAAAGCGGTTGGAAAATCACACGGAGGAGATAAGCAAGGCGCTTGGTCTTCTTCCTTTAGCTGCATCGGGTCTTTCAGCTGGAATATCGGAGGATATTGAAAAGATTTGCGATAATATGGAGGAAACTGGATTTAAGGTTGCGGTAGCGGATGAAGAGATTTTAGAGAAAATCGAGTCAGGGATAAGAGAAAACAATGTCAATCGTTCTTATGCAAATAATTTAATAACTCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAGGTCGACGATGAAGGTTGAACTTGAAGAGTTTAAGAAAGAAATTGAAAATGCGCGTGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCCTCATCACCGTGCGAAAGGAAACTGAAATACTTTGCGAAACGCCAGTCTTTAGGAACTCGGATCTTAGAGCCTTTACAGTCATTTTACTGTCCTATCACACATGATGTTATGATGGAGCCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAAAAATGGTTCGAAGAAGGAAACAAGTCCTGTCCTTTGACAATGATTCCTTTAGACACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTACTTTGAAAGAAAAAATACACCAGTTTGGAGATGATGATGAAGTGATGGAATGTCTAAAAACTGTTCAAGAGTTGTGTGAGCAGAGAGAGCAACACAGGGAGTGGTTGATGCTTGAAGACTACATACTAGTTCTTATCCAAATTCTCAGTTCGAAAAACCGCGATATAAGGAATCGTGCTCTTGTCATCCTTTGCATTCTAGCAAATGATAATGACGAAGCTAAGGAAAGAATTGTAACGGTTGATGACGCAATTGTTTCGATCGTCCATTCTCTTGGACGACGTCCGGAAGAAAGGAAGTTAGCAGTAGCATTACTGCTTGAATTATCCAGAAATGATATGGCGCGGGAACACATTGGAAATGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAACGGAGATGATGATCAAGCTGCTAGAGATGCAACTGAACTGTTGTATAATCTTTCATACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCACGCATTTACTCCAGCGTCTCTCCACAGGGCCAGATGATGTAAAGATGATCATGGCCAAAACTTTAGCAGAAATGGAGTTAACTGACCATAATAAAGAGTCTTTATTTGATGGTGGTGTATTGGCTCCTCTTCTTCACCTATTCTTACATTATGATCTTCAGATGAAAAAGGTGGCTACTAAAGCTCTTAGGAATCTATCAAGTTTAAAGAGAAATGGACTAGAAATGATTCGACAAGGTGCCGCACGACCGTTGCTTGACCTCCTTTTCCATCATAACATACAAACATCAAGTTTATGGGAAGATGTAGCAGGCATAATCATGCAACTTGCAGCCTCAGCTACCTCTCAAGATGCTGAAACACTAGTTTTATTACTAGATTCCGATGATGATGTTTTTAACCTTTTTCCTTTAGTCAGTGTGACACAACCTGGTGTGCAACAAAACATTATTCTGACCTTTTATGTCTTGTGTCAGTCACCTTCATCTTCATACATCAAGACCAAGCTAAATCAGTGCTCAGCTATACCAGAATTGGTTAAGTTGTGTGAGAATGAGAATATGAACCTAAGAGCAAGTGCCGTGAAGTTATTTTCACGCTTGGTAGAGAGCTGTGATGAAACCATCATACTAGAGAACGTTGATAAAAAATGCATCGATACTTTACTTCAGATCCTAGAATCTTCATCTGATAAAGAGGAAATACTTTCTGCCATGGGAATAATATGCCATCTGCCAGAAATTGATCAAATAACTCAATGGATTCTGGATGCTGGTATACTTCCAATCATTTATAAATATGTCCAAGACGGTAGAGACAGAGATCTTCAAAGGAGTAACTTGGTAGAGGAAGCTATTGGTGCCTTACATCGCTTTACAGTTCCAACTAACTTGGAGTGGCAAAAGATTGCAGCTGAAACTGGTATTATAACTGTTTTAGTGCAGTTGCTTGAAAGTGGAACAACCTTGACGAAACAACGTGCGGCGCTGTGTCTCGCTGAATTTTCTAAAAGCACGGTTAGGCTCAGCAGACTGATTCTGAACCGAAAAGGACTACTATGTTGCTTCTCAGCTCCAAAAGAAATTGGCTGCAGAGTTCATGGAGGAATATGCACTGTCAAGTCATCATTTTGCCTTTTGGAAGCTGAAGCAATTAGACCACTCACAAGGAATCTTGGAGAATCTGATGATGGAGTTTGCGGGGCTTCTTTGGATGCTTTATTAACATTAATCGAAGGTGAAAAACTAGAGAGTGGTAGTAAAGTGCTTGCTACAGAAAATGCAATACCCTTGATAATAAAATTTCTCAGTTCTTCCTCTCCTGAGCTGCAAGAAAAGTCTCTAAATGTTTTGGAAAGGATTTTTCAGCTAGTAGAGTTCAAACAGTTGTATGGAAGTTCAGCTCAAATGCCTCTAGTTGACTTAACACAGAGGAGTAGTGGTAGAGTTAGATCCATGTCAGCTAGAGTATTGGCACATTTGAATGTTCTTCATGATCAGTCTTCATACTTTTAA 3021 0.3916 MTVVDLFTSGPTATAISQIIDTIGEFLFYASDVLVNKDSFKELGAYLERIMPVLKELRKEKVSDSEAFNHAIEVMNRETKDAKLLALECSKKSKFYLLMNCRSIVKRLENHTEEISKALGLLPLAASGLSAGISEDIEKICDNMEETGFKVAVADEEILEKIESGIRENNVNRSYANNLITLIAEAVGITNERSTMKVELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPCERKLKYFAKRQSLGTRILEPLQSFYCPITHDVMMEPVETSSDQTFERSAIEKWFEEGNKSCPLTMIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVMECLKTVQELCEQREQHREWLMLEDYILVLIQILSSKNRDIRNRALVILCILANDNDEAKERIVTVDDAIVSIVHSLGRRPEERKLAVALLLELSRNDMAREHIGNVQGCILLLVTMSNGDDDQAARDATELLYNLSYSDQNVILMAKANYFTHLLQRLSTGPDDVKMIMAKTLAEMELTDHNKESLFDGGVLAPLLHLFLHYDLQMKKVATKALRNLSSLKRNGLEMIRQGAARPLLDLLFHHNIQTSSLWEDVAGIIMQLAASATSQDAETLVLLLDSDDDVFNLFPLVSVTQPGVQQNIILTFYVLCQSPSSSYIKTKLNQCSAIPELVKLCENENMNLRASAVKLFSRLVESCDETIILENVDKKCIDTLLQILESSSDKEEILSAMGIICHLPEIDQITQWILDAGILPIIYKYVQDGRDRDLQRSNLVEEAIGALHRFTVPTNLEWQKIAAETGIITVLVQLLESGTTLTKQRAALCLAEFSKSTVRLSRLILNRKGLLCCFSAPKEIGCRVHGGICTVKSSFCLLEAEAIRPLTRNLGESDDGVCGASLDALLTLIEGEKLESGSKVLATENAIPLIIKFLSSSSPELQEKSLNVLERIFQLVEFKQLYGSSAQMPLVDLTQRSSGRVRSMSARVLAHLNVLHDQSSYF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01068 1006 Coils Coil 193 220 - -
Vifa4g01068 1006 Gene3D - 862 1004 IPR011989 -
Vifa4g01068 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 331 IPR013083 -
Vifa4g01068 1006 CDD RING-Ubox_PUB 263 312 IPR045210 -
Vifa4g01068 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Vifa4g01068 1006 SUPERFAMILY ARM repeat 340 996 IPR016024 -
Vifa4g01068 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 918 958 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 665 705 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 707 746 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Vifa4g01068 1006 SMART arm_5 750 796 IPR000225 GO:0005515
Vifa4g01068 1006 CDD MLKL_NTD 10 145 - -
Vifa4g01068 1006 Gene3D - 332 621 IPR011989 -
Vifa4g01068 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Vifa4g01068 1006 Gene3D - 13 126 IPR036537 GO:0007166
Vifa4g01068 1006 Gene3D - 622 858 IPR011989 -
Vifa4g01068 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Vifa4g01068 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Vifa4g01068 1006 SUPERFAMILY RING/U-box 249 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01068 Vifa-Chr4 309343901 309347757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01068 261 1006 U-box Gene Family AT1G76390 28.010 1.28e-64 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01068 - - psat:127076110 1827.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01068 4 309343901 309347757 Vifa4g01068 4 309343901 309347757 ECH